Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq18 141 2e-28
seq4 140 7e-28
seq19 138 2e-27
seq7 96.9 7e-15
seq2 96.9 7e-15
seq9 95.1 3e-14
seq32 89.7 1e-12
>seq18
Length=397515
Score = 141 bits (156), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || ||||||||||| || | ||| || || |||||||| || || ||||| || |||
Sbjct 320643 TCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 320584
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| || || ||||||||||| || ||||| || || || |
Sbjct 320583 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 320524
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| |||||||| | || || ||||| ||||| ||||| || || | ||||| |||
Sbjct 320523 TCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 320464
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 320463 AAGATCTGCAT 320453
Score = 129 bits (142), Expect = 1e-24
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| ||||||||||| || | ||| || || || ||||| || || ||||| || |||
Sbjct 321226 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 321167
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| ||||| ||||||||||| || ||||| || || ||| |
Sbjct 321166 ATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 321107
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| |||||||| | ||||| ||||| ||||||
Sbjct 321106 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 321071
Score = 125 bits (138), Expect = 1e-23
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| ||||| |||||||| || ||||||||| || ||||| || || ||||| || ||
Sbjct 321527 TTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAA 321468
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
|||||| || || ||||| ||| || ||||||||||| || ||||| || || ||| |
Sbjct 321467 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 321408
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| ||||| || | ||||| ||||| ||||||
Sbjct 321407 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 321371
Score = 111 bits (122), Expect = 3e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || |||| ||| ||||| | ||| || || |||||||| || || ||||| || |||
Sbjct 320935 TCCTTCTGGACGTTATAGTCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 320876
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| || || ||||||||||| |||||||| || || ||| |
Sbjct 320875 ATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 320816
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
|| || ||||| || | || || ||||| ||||||
Sbjct 320815 TCAATCGTGTCAGACGACTCAACCTCGAGGGTGATC 320780
>seq4
Length=1400164
Score = 140 bits (154), Expect = 7e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| ||||| || | ||| || || || ||||| |||||
Sbjct 473964 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 474023
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| || ||||| || || || ||||| |||||||| || || |||||| ||||
Sbjct 474024 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 474083
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| || || ||| | ||||| ||||| || | |||||
Sbjct 474084 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 474143
Query 283053 TCGAGAGTGATC 283064
||||| ||||||
Sbjct 474144 TCGAGGGTGATC 474155
Score = 138 bits (152), Expect = 2e-27
Identities = 144/189 (76%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| ||||| || | ||| || || || ||||| |||||
Sbjct 472802 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 472861
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| || ||||| || || || ||||| |||||||| || || |||||| ||||
Sbjct 472862 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 472921
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | ||||| |||||||| | ||||||
Sbjct 472922 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 472981
Query 283053 TCGAGAGTG 283061
||| |||
Sbjct 472982 GTGAGCGTG 472990
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| ||||||||||| || | ||| || || || ||||| || || ||||| || |||
Sbjct 474310 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 474369
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| | ||| || ||||| || || ||||||||||| |||||||| || || ||
Sbjct 474370 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAAC 474425
>seq19
Length=354189
Score = 138 bits (152), Expect = 2e-27
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || ||||||||||||| ||| |||||||| ||||| || || || |||||||||
Sbjct 127506 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 127447
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | || || |||||| || || ||||||||||| |||||||| || || ||| |
Sbjct 127446 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 127387
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| |||||||| | ||||| ||||| ||||||
Sbjct 127386 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 127351
>seq7
Length=1041051
Score = 96.9 bits (106), Expect = 7e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || | |||||||||||| | | | ||| ||| || ||||| ||||| || |||
Sbjct 755326 TCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAAG 755267
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || ||||| ||| || ||||||||||| ||| |||| | || |||
Sbjct 755266 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGACGTCG 755207
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
| ||| |||||||| | ||||| ||||| ||||||
Sbjct 755206 TAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 755171
>seq2
Length=1536035
Score = 96.9 bits (106), Expect = 7e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || || || | || || || |||||||||||||| |
Sbjct 485214 ACCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 485155
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || |||||||| || || ||||| ||
Sbjct 485154 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGG 485095
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024
|| ||||||||||| |||||||| || || ||
Sbjct 485094 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 485062
>seq9
Length=941111
Score = 95.1 bits (104), Expect = 3e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 282913 TTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972
|||| | |||||||| | |||||||||| ||||| || || ||||| || || || |
Sbjct 137395 TTTGAACCTTGTAGTCTTCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGA 137336
Query 282973 AACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGA 283032
|| || ||||| || || ||||||||||| |||||||| || || ||| | ||||
Sbjct 137335 GCCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGATGTCGA 137276
Query 283033 TAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
| ||| || | | ||| ||||||||||||
Sbjct 137275 TCGTGCTGGAGGACTTGACATCGAGAGTGATC 137244
>seq32
Length=59280
Score = 89.7 bits (98), Expect = 1e-12
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836
|| ||||| ||||| | ||| || || ||||||||| ||||| || | || ||| |||
Sbjct 22799 TTTGTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAAC 22858
Query 273837 TGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895
|| || | |||| | ||| ||| ||||||||||| |||||| | | ||| || |
Sbjct 22859 TGGCCGTTCGGGTCG-AGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCC 22917
Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955
||||| || ||||| || || | ||||||||||| || || ||| || | ||| ||
Sbjct 22918 GACGATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTA 22977
Query 273956 ACC 273958
||
Sbjct 22978 GCC 22980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738019801552
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