Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18 129 4e-25 >seq18 Length=397515 Score = 129 bits (142), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||| |||||||| || |||||| |||||||||||||| Sbjct 320683 CATGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 320624 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || ||||||||||| || |||||||| |||||||| || | Sbjct 320623 CGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 320564 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| || ||| | || ||||| | || Sbjct 320563 AGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGT--CGATCGTGTCCGACGAC 320506 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || ||||| || ||||||||||| |||||||| |||||| Sbjct 320505 TCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 320452 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | || ||||| || ||||| || || |||||||| ||||||||||| Sbjct 321564 TTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTT 321505 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| |||| || ||||||||||| || |||||||| |||||||| || | | Sbjct 321504 GAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCG 321445 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | || ||||| ||| ||||| ||| | | | || ||||||| || || | Sbjct 321444 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 321385 Query 44289 CCTC 44292 |||| Sbjct 321384 CCTC 321381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990013910296