Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq18 150 4e-31
seq19 120 7e-22
seq4 116 9e-21
>seq18
Length=397515
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||||||||| || || |||
Sbjct 320456 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCGGAC 320515
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| || || |||||||| ||||||||
Sbjct 320516 ACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAG 320575
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || |||||||| ||||| | |||||| | ||||| ||| ||
Sbjct 320576 CGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATC 320635
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 320636 CAGAAGGAGTCGACCCTTCACCTCGT 320661
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| |||||||||||
Sbjct 321371 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 321430
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || ||||| || |||||||| || | |||||||| || || ||||| || ||
Sbjct 321431 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 321490
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135
||| | || ||| ||||| ||| | ||||| ||||| || ||||| || ||||||||
Sbjct 321491 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 321550
Score = 138 bits (152), Expect = 3e-27
Identities = 135/174 (78%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| || || |||||||| ||||| |||||
Sbjct 320780 GATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACGTCAAGGCCAAGATCCAGGA 320839
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || ||||||||||| |||||||| || | |||||||| || || |||||||| ||
Sbjct 320840 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 320899
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||| | |||||| | || ||||||||||| || || || || || || || ||
Sbjct 320900 TGGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGT 320953
Score = 134 bits (148), Expect = 3e-26
Identities = 134/174 (77%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| |||||||||||
Sbjct 321071 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 321130
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || || ||||| |||||||| || | |||||||| || || |||||||| ||
Sbjct 321131 CAAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 321190
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | |||||| | ||||| ||| |||| ||||| || || || || || ||
Sbjct 321191 CGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGT 321244
>seq19
Length=354189
Score = 120 bits (132), Expect = 7e-22
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| ||||| |||||
Sbjct 127351 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 127410
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || ||||| || |||||||| || || ||||| ||||| || |||||||| ||
Sbjct 127411 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 127470
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | |||||| | || || ||| | || || || || || || || || ||
Sbjct 127471 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 127524
>seq4
Length=1400164
Score = 116 bits (128), Expect = 9e-21
Identities = 130/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| |||||||||||
Sbjct 474155 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 474096
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || || || || |||||||| || | ||||||||||| || ||||| || ||
Sbjct 474095 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 474036
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | || || ||| |||||| | || || || || || ||||| || ||
Sbjct 474035 CGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGT 473982
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037
|| ||||||||||| |||||||| ||||| |||||||| || || || || || |||
Sbjct 472971 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGAC 472912
Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097
||||| || | ||||||||||| || ||||| || || || | || || ||| |||
Sbjct 472911 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACGCTCAGCGACTAT 472852
Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||| | || || || || || ||||| || ||
Sbjct 472851 AACATTCAGAAGGAGTCGACGCTGCACCTGGT 472820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203729842793072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |