Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 154 1e-32 seq18 123 2e-23 seq2 118 1e-21 seq19 109 5e-19 seq9 91.5 1e-13 seq1 87.8 2e-12 seq13 86.0 6e-12 >seq4 Length=1400164 Score = 154 bits (170), Expect = 1e-32 Identities = 146/184 (79%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| |||||||||||||||||||||| Sbjct 473963 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 474022 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||||| |||| || ||||||||||||||||| |||| |||||| ||||| | || Sbjct 474023 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 474082 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| | || || | ||| | | | |||||| |||||| | Sbjct 474083 AATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 474141 Query 41814 CCTC 41817 |||| Sbjct 474142 CCTC 474145 Score = 147 bits (162), Expect = 2e-30 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| |||||||||||||||||||||| Sbjct 472801 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 472860 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||||| |||| || ||||||||||||||||| |||| |||||| ||||| | || Sbjct 472861 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 472920 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 || || |||||||||| ||| || Sbjct 472921 AATGCCCTCCTTGTCCTGGATCTT 472944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 474274 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 474333 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 474334 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 474393 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 474394 ATGCCCTCCTTGTCCTGGATCTT 474416 >seq18 Length=397515 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||||||||| ||||| || || || Sbjct 320680 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 320621 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||||||||| || ||||| |||| |||||| ||||| | || Sbjct 320620 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 320561 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || || | || | | | ||||| |||||| | Sbjct 320560 GATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 320502 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 320501 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 320452 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 321263 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 321204 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||||||||| || ||||| |||| |||||| ||||| | || Sbjct 321203 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 321144 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| | || || | ||| | | | ||||| |||||| | Sbjct 321143 AATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGA 321085 Query 41814 CCTC 41817 |||| Sbjct 321084 CCTC 321081 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||||||||| | ||||||||| || Sbjct 320972 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGACGTTATAGTCCGA 320913 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||||||||| || ||||| |||| |||||| ||||| | || Sbjct 320912 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 320853 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 320852 GATTCCCTCCTTGTCCTGGATCTT 320829 >seq2 Length=1536035 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||||||||| ||||| ||||| ||| Sbjct 485213 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 485154 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| |||| |||||| ||||| | ||| Sbjct 485153 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 485094 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 485093 ATGCCCTCCTTGTCCTGGATCTT 485071 >seq19 Length=354189 Score = 109 bits (120), Expect = 5e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||| || || ||||| |||| ||||||||||||||||| || Sbjct 127507 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 127448 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || |||||||| ||||| | ||| | || |||||||||| ||| || Sbjct 127447 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 127400 >seq9 Length=941111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||||||||| || || || ||||| || || ||| | |||| || ||||| Sbjct 137437 CGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTT 137378 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| ||| ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 137377 CGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAG 137318 Query 41754 GAACGCTCTCCTTGTCCATGATTTT 41778 | | || |||||||||| ||| || Sbjct 137317 GGATGCCCTCCTTGTCCTGGATCTT 137293 >seq1 Length=1672916 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690 |||| |||||||| || || | || ||| ||||||||| || | | | || | Sbjct 766981 CACCCCCGCCGCGCAGGCGCAGCAGCAGGTGCAGCGTGGCATCACGCGCGACGCAGTACT 767040 Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 ||| ||||||||| |||| || |||||||||||| |||| | |||||||| ||||| | Sbjct 767041 CGGCGAGGGTGCGGGCGTCCTCCAGCTGCTTGCCGCCGAACAAGAGGCGCTGCTGGTCAG 767100 Query 41751 CGGGAACGCTCTCCTTGTCCATGATT 41776 || | || |||||||||| |||| Sbjct 767101 GCGGGATGCCCTCCTTGTCCTGGATT 767126 >seq13 Length=669178 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| ||||||| || | || | | ||| ||||| ||||| || Sbjct 163938 GCCGCCCCGCAGACGGAACACCATCTGGATGGTAGTGTTGCGCTGGATGTTGTAGTCCGA 163997 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || ||||||||||||| |||| ||||||||||| ||||| || || Sbjct 163998 GAGCGTACGTCCATCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGCCGG 164057 Query 41755 AACGCTCTCCTTGTC 41769 || || | |||||| Sbjct 164058 AATGCCCAGCTTGTC 164072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303491465600