Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 seq13 150 2e-31 seq3 132 5e-26 seq12 122 9e-23 seq6 102 8e-17 >seq2 Length=1846957 Score = 172 bits (190), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | Sbjct 971410 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 971351 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 971350 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 971292 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 971291 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 971232 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || ||||| |||||| | ||| | || ||| Sbjct 971231 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 971183 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || | |||| || Sbjct 970607 TCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCG 970548 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || |||| ||||| || || |||||||||||||| ||| | | Sbjct 970547 CGGGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTA 970488 Query 40886 CGCTGCATCTAGTG 40899 ||||||| || ||| Sbjct 970487 CGCTGCACCTGGTG 970474 >seq13 Length=704413 Score = 150 bits (166), Expect = 2e-31 Identities = 140/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748 |||| | || |||||| | | |||||||| || ||| ||||||||||| || ||||| Sbjct 257768 GGACATCTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGACACTTCAT 257827 Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808 | |||||| || ||||| |||||||| |||||||||||||||||||| |||| || Sbjct 257828 CTCGCACGTCCTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGA 257887 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | | ||| | |||||||||| | ||||||||||| || |||||||| || |||||| Sbjct 257888 GAGGTTCTCGGCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGATC 257945 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||||||||||||||| |||||| | | | |||| || | || || | Sbjct 258178 AGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTGTTTGCGGAACGAC 258237 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || | Sbjct 258238 TGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 258297 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 |||| || || || ||| | ||||||||| |||| ||| Sbjct 258298 GGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTC 258335 Score = 91.5 bits (100), Expect = 2e-13 Identities = 201/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||| || || || |||||||||||| | || ||| | Sbjct 258397 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 258456 Query 117203 CATTTGGTGCAGCGACCGAGCGCGGCGC-GCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || ||||| ||||| | | ||||| | ||| || |||| || |||| Sbjct 258457 CACCTCGAGCGCCGACC-AGCGCCTCACCGCGTCGCCCAAATCATCGCCGAAGCCGTCGA 258515 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||| || || || |||| || | || | || | || |||| Sbjct 258516 GATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAAC-GCGA 258574 Query 117322 AACG-ATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380 | ||| || ||||||||||||||||| ||| | |||| ||| ||| | || Sbjct 258575 CCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG 258634 Query 117381 CCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 |||| ||||| | |||||| | ||||||||| | | ||||| ||||| Sbjct 258635 AGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAG 258690 >seq3 Length=1525690 Score = 132 bits (146), Expect = 5e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| || | ||||||||||||||||||| ||||||| | | | || | ||| Sbjct 1124228 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGAC-GACCGCTCCGT 1124170 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 |||||||||||| || || || ||||| |||||||||||| ||||||| || ||| || Sbjct 1124169 CTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 1124110 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| |||||| | |||||||| || || ||| Sbjct 1124109 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 1124058 Score = 93.3 bits (102), Expect = 4e-14 Identities = 199/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||| ||||| || |||||||||||| | || ||| | Sbjct 1123957 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 1123898 Query 117203 CATTTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || || || | | || | || ||| | ||| || ||| ||||||| Sbjct 1123897 CACCTCGAGCGCCGCCCTCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGA 1123839 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 |||||||| |||||||| || |||||||| || || | || | || |||| Sbjct 1123838 GATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGA 1123779 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || ||||||||||| || |||||| | |||| ||| || | | || Sbjct 1123778 CCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAACGA 1123719 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| |||| ||| | |||||| | ||||| ||| | | ||||| ||||| Sbjct 1123718 GAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGAG 1123664 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || || |||| || Sbjct 1175723 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 1175782 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || |||| || || || || |||||||||||||| ||| | | Sbjct 1175783 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 1175842 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 1175843 CCCTCCACCTCGTGCTGCG 1175861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || || |||| || Sbjct 1175283 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 1175342 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || || | || || || || |||||||||||||| ||| | | Sbjct 1175343 CGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 1175402 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 1175403 CCCTCCACCTCGTGCTGCG 1175421 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTT 116745 |||||| ||||||||| | | ||||||| | | || ||| ||||| | || Sbjct 1124711 GGACCTCTCCAAGGACCTCAACCACTGGGACAACAAGCTCAAGGACGACGAGAAGTACTT 1124652 Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 |||| |||||| || ||||| ||||||||| |||||||||||||||||||| |||| Sbjct 1124651 CATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 1124592 Query 116806 CGAG 116809 |||| Sbjct 1124591 CGAG 1124588 >seq12 Length=765624 Score = 122 bits (134), Expect = 9e-23 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || || | || Sbjct 75594 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 75652 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||||||| | |||||||| || ||||||| ||| ||||| ||||| || || Sbjct 75653 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 75712 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| ||||||||||||||||||||| | || || || || || Sbjct 75713 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 75766 >seq6 Length=1157922 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||| ||||| ||||| || Sbjct 265914 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 265855 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||| || ||||||||||||||||||||| | || || || || || Sbjct 265854 GACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 265799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218697661280