Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 9e-35
seq3 114 1e-20
seq12 87.8 2e-12
seq6 87.8 2e-12
>seq2
Length=1846957
Score = 161 bits (178), Expect = 9e-35
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||| || |||||||||| |||| ||||||||| || || |||||||| |||||
Sbjct 971184 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 971243
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||||| ||||| ||||| || || ||| |||| | |||||||| ||||||||
Sbjct 971244 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 971303
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| ||||||||||| ||| || || || | |||| |||||||| |||||||
Sbjct 971304 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 971363
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740
|||| ||| | || |||||||| || || || || || ||||||||||
Sbjct 971364 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 971412
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/119 (78%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586
||||| ||| | ||||||||||| || |||||||||| || | || | |||| |||
Sbjct 970474 CACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAAT--CTGAAAGCGTGCGTCCGTCC 970531
Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || || ||| |||| | |||||||| |||||||| || |||||||||||
Sbjct 970532 TCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTC 970590
Score = 89.7 bits (98), Expect = 4e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| | | || ||| | ||||| || |||||||| || || || |||||
Sbjct 970889 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 970948
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| || ||||||||||| || || ||| |||| | ||||| || ||||||||
Sbjct 970949 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 971008
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| |||||||| || ||| || || || | |||| |||||| | |||||||
Sbjct 971009 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 971068
Query 118692 TCGA 118695
||||
Sbjct 971069 TCGA 971072
>seq3
Length=1525690
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||||||||| | | || ||| | ||||| || |||||||| || |||||||||||
Sbjct 1175435 TACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 1175376
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || |||||||||||| || || ||| |||| ||||||||||| |||||||
Sbjct 1175375 AAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAG 1175316
Query 118630 GTATGCCCTCCTTGTC 118645
| || |||||||||||
Sbjct 1175315 GGATTCCCTCCTTGTC 1175300
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| | | || ||| | ||||| || |||||||| || |||||||||||
Sbjct 1175873 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1175814
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| || ||||||||||| || || ||| |||| ||||||||||| ||||||||
Sbjct 1175813 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1175754
Query 118632 ATGCCCTCCTTGTC 118645
|| |||||||||||
Sbjct 1175753 ATTCCCTCCTTGTC 1175740
>seq12
Length=765624
Score = 87.8 bits (96), Expect = 2e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| || | ||||| ||||||||||| || ||
Sbjct 75754 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 75695
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| ||||||| |||||||| || || || |||||||||||||| || || ||
Sbjct 75694 GCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 75635
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699
|| | |||| ||||||| ||||||||||| |||
Sbjct 75634 ACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75597
>seq6
Length=1157922
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| || | |||||| |||||||||||
Sbjct 265804 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTG 265863
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || ||| |||| || |||||||| ||||| || ||||||||||||||
Sbjct 265864 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 265914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829987589976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |