Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 161 9e-35 seq3 114 1e-20 seq12 87.8 2e-12 seq6 87.8 2e-12 >seq2 Length=1846957 Score = 161 bits (178), Expect = 9e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| || |||||||||| |||| ||||||||| || || |||||||| ||||| Sbjct 971184 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 971243 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| | |||||||| |||||||| Sbjct 971244 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 971303 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||| || || || | |||| |||||||| ||||||| Sbjct 971304 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 971363 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 971364 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 971412 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/119 (78%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586 ||||| ||| | ||||||||||| || |||||||||| || | || | |||| ||| Sbjct 970474 CACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAAT--CTGAAAGCGTGCGTCCGTCC 970531 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || ||| |||| | |||||||| |||||||| || ||||||||||| Sbjct 970532 TCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTC 970590 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||| | ||||| || |||||||| || || || ||||| Sbjct 970889 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 970948 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||||||||| || || ||| |||| | ||||| || |||||||| Sbjct 970949 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 971008 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| || ||| || || || | |||| |||||| | ||||||| Sbjct 971009 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 971068 Query 118692 TCGA 118695 |||| Sbjct 971069 TCGA 971072 >seq3 Length=1525690 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | || ||| | ||||| || |||||||| || ||||||||||| Sbjct 1175435 TACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 1175376 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||||||||| || || ||| |||| ||||||||||| ||||||| Sbjct 1175375 AAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAG 1175316 Query 118630 GTATGCCCTCCTTGTC 118645 | || ||||||||||| Sbjct 1175315 GGATTCCCTCCTTGTC 1175300 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||| | ||||| || |||||||| || ||||||||||| Sbjct 1175873 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1175814 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||||||||| || || ||| |||| ||||||||||| |||||||| Sbjct 1175813 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1175754 Query 118632 ATGCCCTCCTTGTC 118645 || ||||||||||| Sbjct 1175753 ATTCCCTCCTTGTC 1175740 >seq12 Length=765624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | ||||| ||||||||||| || || Sbjct 75754 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 75695 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| |||||||| || || || |||||||||||||| || || || Sbjct 75694 GCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 75635 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || | |||| ||||||| ||||||||||| ||| Sbjct 75634 ACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75597 >seq6 Length=1157922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | |||||| ||||||||||| Sbjct 265804 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTG 265863 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 265864 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 265914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829987589976