Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13 183 7e-41 seq4 100 6e-16 >seq13 Length=704413 Score = 183 bits (202), Expect = 7e-41 Identities = 441/666 (66%), Gaps = 15/666 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| ||||| || ||| | || |||||| | | || ||| Sbjct 567525 TTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCCGAGCGACCG 567584 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| || ||| || ||||| || ||| | || Sbjct 567585 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATC 567644 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| | ||| || || | | || || || | ||||||||||||||| Sbjct 567645 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 567704 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| || || ||||| |||||||| || | | ||| | |||||||| Sbjct 567705 GCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCG 567764 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || |||||||| | ||||| ||| || || || || ||| Sbjct 567765 ATCGAGGGCATCTACGACACGCTCA---AGACGTGCGCGCTCATCTCCAAGACGGCAGGC 567821 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||| ||||| || ||||||||| |||| |||||||||||| || || || Sbjct 567822 GGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAAC 567881 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || ||| | ||| | || || | | ||| || | | | || Sbjct 567882 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 567941 Query 249250 AACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCAC 249303 |||||| || ||||| ||| |||||||||| || | || ||||||| Sbjct 567942 GACCAGGGAGGCAACAAGCGCC---CGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCAC 567998 Query 249304 GCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCG 249363 ||||| || || |||||||| ||| | |||||| ||||||| ||| | | ||| Sbjct 567999 GCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCG 568058 Query 249364 CGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGAC 249423 || ||| | |||| | ||| ||| || ||||| | |||||| || ||| || || Sbjct 568059 CGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAAC 568118 Query 249424 GGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCC 249483 ||||| ||| | || | | ||| |||| || || | ||| ||| | |||||| | Sbjct 568119 GGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGAC 568178 Query 249484 GACTTC 249489 || ||| Sbjct 568179 GAGTTC 568184 >seq4 Length=1267704 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 ||||| |||||| || | ||||| |||||||| ||| | ||||| |||||||||||| Sbjct 717627 CCGCCGTTCAAGATCATCATCCTCGACGAGGCAGACTCGATGACCCAAGACGCGCAGTCC 717568 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 ||||||||||||| ||||||| ||||| | ||| | || ||| || | |||||| Sbjct 717567 GCCCTCCGCCGAATCATGGAGAACCACTCGAAGATCACGAGGTTCTGCTTGATCTGCAAC 717508 Query 254325 TACGT 254329 ||||| Sbjct 717507 TACGT 717503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765326904704