Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq13 306 3e-78
seq3 104 2e-17
seq2 104 2e-17
>seq13
Length=704413
Score = 306 bits (338), Expect = 3e-78
Identities = 511/739 (69%), Gaps = 0/739 (0%)
Strand=Plus/Minus
Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202
|||||||||||||||| | || |||||||||||||||| | ||||| || || |||
Sbjct 568310 ATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTACCA 568251
Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262
| |||| ||| | | ||| | | || || | ||||||||||| | |
Sbjct 568250 GAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAAGAG 568191
Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
| | | || ||| | ||||| ||| || ||||||| | ||| || | |||
Sbjct 568190 CTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAAGAG 568131
Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382
||| || | || || || ||| || || || || ||||| || || |
Sbjct 568130 GGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAA 568071
Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442
||||| ||||| ||||| |||||||| |||||| |||||| | || | || ||
Sbjct 568070 GAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTC 568011
Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502
|| | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| |||||
Sbjct 568010 GAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCC 567951
Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562
||||| |||||||| || ||||||||||||||||| | ||||| || | || |||||
Sbjct 567950 TCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTT 567891
Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622
|| |||| ||| || | |||||| | || || | |||||| | ||
Sbjct 567890 CGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAG 567831
Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682
|| ||||| || ||| || || || | |||||| || || ||||||||||||||
Sbjct 567830 GCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCC 567771
Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742
|||||| ||| || || ||| ||| | ||| ||||| || | |||| | |||||
Sbjct 567770 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGT 567711
Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802
|||| ||| || ||||| |||||||||||||| | | |||||| || |||||
Sbjct 567710 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 567651
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
||| ||||| ||| |||||||| || ||||| || |||| ||||||||||| | |||
Sbjct 567650 CGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCAT 567591
Query 23863 GTATTGAGGTCTCTCGACC 23881
|| || |||| |||| ||
Sbjct 567590 GTGCTGCGGTCGCTCGGCC 567572
Score = 194 bits (214), Expect = 1e-44
Identities = 407/600 (68%), Gaps = 15/600 (3%)
Strand=Plus/Minus
Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158
|| || || ||| || || |||| |||||| |||| | |||||| || || ||
Sbjct 569499 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTA 569440
Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217
|||||||||||| ||||| ||||||| |||| || || |||||||| | | ||||
Sbjct 569439 CATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 569380
Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277
||||| | | || || |||| |||||| ||| ||||| ||||| || || |
Sbjct 569379 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGT 569321
Query 22278 CGGCGGCCATATTTATCAATGTACG--CAT---CGACATTTCCCATACGGTCTTGTACAG 22332
||||||| | | | ||| ||| | | ||| || ||||| ||||||||||| |
Sbjct 569320 CGGCGGCGAGGT----CGATG-ACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 569266
Query 22333 TTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392
|| ||| ||| || || || |||||| || ||||| | |||||
Sbjct 569265 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 569206
Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452
| || || |||| |||||||||| ||| | || | || || || |
Sbjct 569205 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 569146
Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512
||| || || || |||||||||| | ||||||||| ||| |||||||| ||| ||||
Sbjct 569145 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 569086
Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572
||||| | || ||| || || ||||| |||||| ||||| ||||||||||| |
Sbjct 569085 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCA 569026
Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632
|| |||||||| | | |||||||| | ||| || ||| | | | |||||||||
Sbjct 569025 CACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCA 568966
Query 22633 CAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692
||| || | |||||| || || ||||| |||||| ||||| | |||| | ||||| ||
Sbjct 568965 CAGGTCCGTCGGCGTGAC---GTTCCACAGATCGTACTGCAAGAGGCCGTGGCTCGCGGG 568909
>seq3
Length=1525690
Score = 104 bits (114), Expect = 2e-17
Identities = 219/321 (68%), Gaps = 32/321 (10%)
Strand=Plus/Minus
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || ||||||||||| |||||||| || || ||||| ||||| | | |||
Sbjct 1123957 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 1123898
Query 58137 CACATTGT-------CAATAAACCGACGCGG--GATCGCATCTTGGACATTATCACCGAG 58187
||| | | | | ||||| ||| || |||||| ||| ||||
Sbjct 1123897 CACCTCGAGCGCCGCCCTCACCCCGACACGGTCGAGCGCATC---------ATCCGCGAG 1123847
Query 58188 GCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC---GGT 58244
||||||| |||||| | ||||| |||| || || || || || || |||| ||
Sbjct 1123846 GCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGT---CAAGCTCATCGGC 1123790
Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT--TTGCTCG 58302
||||||| || | |||| ||||||| ||||||||||||||| | ||| ||| |||
Sbjct 1123789 ATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCG-CTTGCTTG-TCG 1123732
Query 58303 AACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGAT 58360
||| | |||| || ||| ||| | | || ||||| || || ||| | ||||
Sbjct 1123731 CACTTGGCAACGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 1123674
Query 58361 CTCGCTCGAGGGCAAGACAAA 58381
|||| | ||||||||||| ||
Sbjct 1123673 CTCGATGGAGGGCAAGACCAA 1123653
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||| |||| | || ||||||||||||||||||| || || ||||| || ||| ||
Sbjct 1124168 TTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 1124109
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
||| | || || ||| | ||||| |||||| |||||||||| || || ||
Sbjct 1124108 GCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 1124059
>seq2
Length=1846957
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| || || | ||
Sbjct 971411 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 971352
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| || | || ||||||||
Sbjct 971351 GGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 971292
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| ||||| ||| | || ||| | || | ||||| || ||
Sbjct 971291 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 971232
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||| || || || || || || ||||||||
Sbjct 971231 CATCCAGAAGGAGTCTACACTCCATCTGGT 971202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765965377760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |