Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 2e-13 seq3 91.5 2e-13 >seq13 Length=704413 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || ||||| | |||||||| | |||||||||||||||||| || || || ||||| || Sbjct 258337 GAGAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAG 258278 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||| |||||||| || || ||||| || || || | |||| || || | ||||| Sbjct 258277 CCGGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCG 258218 Query 33750 C---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| ||||| | ||||| ||||||||||| Sbjct 258217 CGAGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTTCTT 258177 >seq3 Length=1525690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||||||||| | ||| ||||| || ||||| || ||||| ||||| || Sbjct 1124056 GAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAG 1124115 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||| |||||||| || || || || || || || | || | ||| || | ||| | Sbjct 1124116 CCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGAG 1124175 Query 33750 CTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| | ||||| | | ||||| ||||||||||| Sbjct 1124176 CGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 1124216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816985927840