Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq13 84.2 2e-11
seq2 82.4 8e-11
>seq13
Length=704413
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691
||||||||||| ||||| | || || | |||||||| || ||||| | ||| | |||
Sbjct 258505 GAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGC 258564
Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG-TTGTTGCA 50750
|||||||| | | ||| | ||||||| ||||| || || ||| ||||| |||| ||
Sbjct 258565 ATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGC- 258623
Query 50751 GCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATC 50810
||| || | ||| || ||||| ||||| || |||||| | | || ||
Sbjct 258624 GCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTC 258683
Query 50811 GTTGGAGGGCAAAACAAA 50828
| |||||||||| || ||
Sbjct 258684 GATGGAGGGCAAGACCAA 258701
>seq2
Length=1846957
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || || | ||| || | ||| | |||||| || || || |||||||| |||||
Sbjct 971183 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 971242
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| ||| || || || || || || |||||| || ||||| ||||||||
Sbjct 971243 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 971302
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| || || ||||| ||| || || | | || | ||||||| | || ||
Sbjct 971303 GATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 971362
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||||||||| | || || ||||| || |||||
Sbjct 971363 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 971410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507013905660960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |