Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13 84.2 2e-11 seq2 82.4 8e-11 >seq13 Length=704413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 ||||||||||| ||||| | || || | |||||||| || ||||| | ||| | ||| Sbjct 258505 GAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGC 258564 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG-TTGTTGCA 50750 |||||||| | | ||| | ||||||| ||||| || || ||| ||||| |||| || Sbjct 258565 ATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGC- 258623 Query 50751 GCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATC 50810 ||| || | ||| || ||||| ||||| || |||||| | | || || Sbjct 258624 GCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTC 258683 Query 50811 GTTGGAGGGCAAAACAAA 50828 | |||||||||| || || Sbjct 258684 GATGGAGGGCAAGACCAA 258701 >seq2 Length=1846957 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || || | ||| || | ||| | |||||| || || || |||||||| ||||| Sbjct 971183 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 971242 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| || || || || || || |||||| || ||||| |||||||| Sbjct 971243 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 971302 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| || || | | || | ||||||| | || || Sbjct 971303 GATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 971362 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 971363 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 971410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013905660960