Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 107 4e-18 >seq2 Length=1846957 Score = 107 bits (118), Expect = 4e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | |||||| || ||||| || || ||||| || || | |||||| || Sbjct 971202 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 971261 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || || || || | | ||| || || ||||| ||||| || || |||||| Sbjct 971262 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGA 971321 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | ||| || || || ||||| || || || ||||| Sbjct 971322 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 971381 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 || || || || || || || |||||||| | |||| Sbjct 971382 CCGGTGAGGGTCTTGACGAAGATCTGCATGGTCTGTA 971418 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| |||||||| || || ||||| | |||||| || || || || || Sbjct 970919 GTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCC 970978 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||| || ||||| ||||| || |||||||||||||| || || Sbjct 970979 GCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTG 971038 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 || || || | ||| ||| | || ||||| || || || Sbjct 971039 ACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGAT 971079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397249321224