Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq7 145 1e-30
seq6 145 1e-30
>seq7
Length=1042703
Score = 145 bits (160), Expect = 1e-30
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 148227 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 148286
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| ||||||| | |||| || |||| |||| || | ||||||||||||
Sbjct 148287 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTC 148346
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| | | |||| || | | ||| ||||||||||| || || ||||| ||||||
Sbjct 148347 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 148406
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || ||||||| ||
Sbjct 148407 TCGCTCGACGTCGTCTACGC 148426
>seq6
Length=1157922
Score = 145 bits (160), Expect = 1e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct 539322 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGTCGTGGC 539381
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 539382 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 539441
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 539442 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 539501
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||||||
Sbjct 539502 ACCTCGCTCGACGTCGTCTATGC 539524
Score = 145 bits (160), Expect = 1e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| |||||||||||
Sbjct 555904 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGTCGTGGC 555845
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 555844 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 555785
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 555784 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 555725
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||||||
Sbjct 555724 ACCTCGCTCGACGTCGTCTATGC 555702
Score = 127 bits (140), Expect = 3e-25
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 590530 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 590471
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 590470 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 590411
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 590410 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 590351
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || |||| |||||
Sbjct 590350 ACCTCGCTCGACGTCGTTTATGC 590328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075128684054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |