Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13 221 3e-52 >seq13 Length=704413 Score = 221 bits (244), Expect = 3e-52 Identities = 502/745 (67%), Gaps = 20/745 (3%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||| || || | || ||||| || || |||| Sbjct 567576 GAGCGACCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGAC 567635 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 |||||| || || || || || | | || ||| || |||||||| |||| || Sbjct 567636 CGCGCGATCGAGACGTACAACCTCATGTCGGAGCG-GTACTTTACGCACGCGTCGCCGAC 567694 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || || || | | || ||| | || || ||||| || | | ||||| Sbjct 567695 GCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAA 567754 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| || |||||||| |||| ||||| || |||| || || || || ||||||| Sbjct 567755 GGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGAC 567814 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTT---ACATTCG 363743 |||||||| || || | ||||||||||| | || || || | ||| |||| Sbjct 567815 GGCAGGCGGCATCGGCCTCTCGATCCACAACATCCGCGC---GACCGGTTCGTACATCGC 567871 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 |||||| || |||||||| || | | |||||||| || |||| |||| || || Sbjct 567872 CGGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGC 567931 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | | |||||||||||||| || |||||| || ||||| || || || |||||||| Sbjct 567932 GCGCTACGTCGACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCC 567991 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 || ||||| || || ||||| || || ||||| || ||| || || ||||| | Sbjct 567992 GTGGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGT 568051 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || || || || |||||| ||| |||||| | | |||| || ||| |||| || || Sbjct 568052 CCGCGCGCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGA 568111 Query 363984 GGCAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 |||| | | ||| | ||||| ||||| ||| || ||||| ||| || | Sbjct 568112 -GCAGAACGGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCT 568170 Query 364043 GGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA 364100 || ||||| | | | ||||| | |||||||| || |||||| || || Sbjct 568171 ACGGCGACGAGTTCAAGGAGCTCTTT--GAAAAGTACGAGAAGGAGGGTCGCGC---CAA 568225 Query 364101 G---ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 | || || ||||| |||||||| |||| ||| || | || | ||| | ||||| || Sbjct 568226 GCGCACCATCCCCGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGG 568285 Query 364158 AACACCCTATATGTTGTACAAAGAT 364182 | |||| ||| | ||||| ||| Sbjct 568286 CAACCCCTTCATGCTCTACAAGGAT 568310 Score = 118 bits (130), Expect = 3e-21 Identities = 335/512 (65%), Gaps = 6/512 (1%) Strand=Plus/Plus Query 364648 TTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGT 364707 || |||| ||||| ||||| |||||||| | | || ||| |||||| | | Sbjct 568927 TTGCAGTACGATCTGTGGAACGTCACGCCGACGGACCTGTGGGACTGGGCCGAGTTGAAG 568986 Query 364708 TCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCT 364767 || || | |||| || | |||||||| ||||| ||||| ||||| || || Sbjct 568987 GAGAAGATTGCGCAGCACGGCATCCGCAACTCGCTCGTGTGCGCGCCGATGCCTACCGCC 569046 Query 364768 TCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTAT 364827 || || ||||||||||| ||||||| ||||| |||| || ||| | || Sbjct 569047 TCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTAC 569106 Query 364828 TCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTT 364887 | ||||| || || |||| || || | ||| || || | || || || || Sbjct 569107 ACCCGCCGCGTCCTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTCCTCCGCGACCTC 569166 Query 364888 TCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 ||||||||| |||||| ||| ||||||||| |||||||| || || || Sbjct 569167 GTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACACGATCATCGCGCACAACGGCTCG 569226 Query 364948 GTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAA 365007 | |||||| | || || | || || || || |||| || ||||| ||||| ||||| Sbjct 569227 ATCCAGAACGTCCCCGGCATCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAG 569286 Query 365008 ATTTCCATGCGAA--CTC-TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064 || || || || || |||| || | || ||||| ||||| || || ||| ||| Sbjct 569287 ATCTC---GCAAAAGGTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATCGACCAG 569343 Query 365065 AGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCAT 365124 |||||| | ||||| | | | ||| ||| || |||| || || ||||| Sbjct 569344 TCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCAC 569403 Query 365125 TTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||| ||||| ||||| ||||| || Sbjct 569404 TTCTACGGATGGAAGAAAGGTCTCAAGACGGG 569435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352297460996