Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 1e-15 seq3 84.2 3e-11 >seq13 Length=704413 Score = 98.7 bits (108), Expect = 1e-15 Identities = 361/556 (65%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || |||| | || || || | ||| ||||| || || |||||||| || | || Sbjct 568127 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 568068 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 568067 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 568008 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || || | |||||||| || | ||| ||||| | | || || || ||||| ||||| Sbjct 568007 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 567948 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | || ||||| || || || | | ||| || || || || || || Sbjct 567947 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 567888 Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| || || || || | ||| || || | || || || || || || || | Sbjct 567887 -GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 567829 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409 | || || |||||| | || ||||| | ||||| ||| || | ||| || ||||||||| Sbjct 567828 CGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 567770 Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 63467 || || || ||| |||| || | | ||| || | ||| | || || | | Sbjct 567769 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 567712 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | || || || || | || || || ||||| ||||| | || || | || |||| Sbjct 567711 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 567652 Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583 ||||||| || || ||| || || || | |||| || || ||||| ||||| Sbjct 567651 ACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 567596 Query 63584 AACATGTGCTGAGGTC 63599 | ||||||||| |||| Sbjct 567595 AGCATGTGCTGCGGTC 567580 >seq3 Length=1525690 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 1124055 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 1124114 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 || || ||||| || || || || || || || || | || | ||| || | ||| Sbjct 1124115 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 1124174 Query 32828 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 || ||| | ||||| | | ||||| ||||||||||| Sbjct 1124175 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 1124216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631382208800