Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19 114 3e-20 seq16 114 3e-20 seq8 114 3e-20 seq6 114 3e-20 seq10 100 6e-16 seq13 95.1 2e-14 seq39 86.0 1e-11 >seq19 Length=515428 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 10350 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 10291 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 10290 CCCCACATTGGGC 10278 >seq16 Length=587835 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 140239 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 140298 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 140299 CCCCACATTGGGC 140311 >seq8 Length=938736 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 442112 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 442053 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 442052 CCCCACATTGGGC 442040 >seq6 Length=1157922 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 551448 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 551389 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 551388 CCCCACATTGGGC 551376 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 556675 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 556616 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 556615 CCCCACATTGGGC 556603 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 591298 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 591239 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 591238 CCCCACATTGGGC 591226 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 604355 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 604414 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 604415 CCCCACATTGGGC 604427 >seq10 Length=870310 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 || || || || ||||| ||||||||||| || || ||| | |||||||| || || || Sbjct 74973 GGCTCCCTCTCCGGTGGATGGAAGATGAAACTCGCTCTCGCCCGCGCCATCCT-CTTCGA 74915 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| |||||||| ||||| | |||||| ||||| Sbjct 74914 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCATTTGGACGTCCTCAACGTCGCCTG 74855 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | || |||| ||||| |||||||| Sbjct 74854 GCTCGAGAACTACCTCTGCTCGCTCAAGACCTGCACCTCGATCATCGTCTCGCACGACTC 74795 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 ||| ||||| | ||| ||| | | |||| | ||| Sbjct 74794 TGGTTTCCTCAACAACGTCTGCACCGACATCCTCCAC 74758 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 697415 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGCTGTTGACTGGCGAGACGCTCCCC 697474 Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 ||| ||| ||| |||||| || ||| | || || || |||||||| |||||||| Sbjct 697475 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGAATCGCCTACGTCGCCCAGCACGC 697533 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 ||||||||||||||| | ||||| || | | | || || ||||| ||||||||| Sbjct 697534 CTTCCACCACATCGAGCAGCACCTCGAGAAGTCGGCTGTGCAGTACATCATGTGGCGCTA 697593 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || || || ||| | || ||||| ||||| |||| |||| | ||||||| Sbjct 74401 GTCCTCGGCCCGAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTCCTCGTCGCCGAGACC 74342 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| || ||| || || | |||||||| Sbjct 74341 GAGCCCAACAAGGGCGGTGAGGTGTGGAAGCACCCGAACTTGGTCATCGGCTACGTCGCC 74282 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct 74281 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACTCCGCTCCAGTACAT 74226 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738 ||||| || |||||||| || || ||| | || || |||||||| || ||||| ||||| Sbjct 73876 GGTCTCGAGCCCGAGTTCACCACCCACAACACG-ATGCGCGGTCTCTCCGGAGGTCAGAA 73818 Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 |||||| | ||| ||| || || |||| | ||||||||| || | |||||||| Sbjct 73817 GGTCAAGGTCGTCCTCGCCGCCGCCACCTGGCGCCGCCCTCACGTCGTCATCCTCGACGA 73758 Query 280799 GCCTACCAACTA 280810 ||| |||||||| Sbjct 73757 GCCCACCAACTA 73746 >seq13 Length=704413 Score = 95.1 bits (104), Expect = 2e-14 Identities = 262/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091 || || ||||| ||||||||| ||||||| |||| || || | | || || || Sbjct 569432 GTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 569373 Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | | ||| | ||| | ||||| ||| |||| || || || || || || ||| Sbjct 569372 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGTCGGCGGCG 569313 Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210 ||||| || || ||| |||||||||||| |||||||| | ||| ||||| || Sbjct 569312 AGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGA-TGCGCTTGAGCTC 569254 Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270 | ||||| || |||||||| || || || || || ||| ||||||||| Sbjct 569253 GTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 569194 Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330 | ||| ||| || || | | ||| ||||||| || | | |||||| || | Sbjct 569193 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 569134 Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTC 293390 |||||| || ||||| ||| ||| |||| ||||| || ||| || ||| ||||| Sbjct 569133 GAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 569074 Query 293391 AACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCAT 293429 | ||| ||||| || || ||||||||||| Sbjct 569073 GTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCAT 569035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| |||| Sbjct 258696 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 258637 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | ||||| || || | | ||||| || || ||||| | ||||||| ||| || Sbjct 258636 CTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 258577 Query 251697 TTCAGAGTTCATGCCAATCA 251716 | ||||||||| |||| Sbjct 258576 GGTCGCGTTCATGCCGATCA 258557 >seq39 Length=13956 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||||||||| || |||||||| || |||| || | | ||||| ||| Sbjct 5105 TGCACGCTCATCCTGACCGAAGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 5164 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || || || || | || || |||||||||| || || ||||| |||||||| ||| Sbjct 5165 GTCGTCGGGCGCGACAACTACGGCGTCTTCCCCCTTCGCGGAAAGCTCCTCAACGTCCGC 5224 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || | | |||| | || | || || ||||| || |||||||| ||| | Sbjct 5225 GAGGCGACCG-GCAAAGCGCTCCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCAT 5283 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACA 218041 ||| | ||| || ||||| |||| Sbjct 5284 GGGCTTGCAGCAGGGCAAGACGTACA 5309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835772805598