Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 161 2e-34 seq13 159 6e-34 seq10 141 2e-28 seq19 98.7 2e-15 seq16 98.7 2e-15 seq8 98.7 2e-15 seq6 98.7 2e-15 >seq2 Length=1846957 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | | ||| |||| || || || ||||| || |||||||| || ||| | Sbjct 971184 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 971243 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || |||||||| || Sbjct 971244 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 971303 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||||| ||||||||||| | || || || Sbjct 971304 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 971363 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 971364 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 971410 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| || | ||| || || |||||||| ||||| |||||||| || Sbjct 970889 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 970948 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||||||| ||||| || | | ||||||||||| || Sbjct 970949 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 971008 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| ||||||||| ||||||||||| | || || || Sbjct 971009 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 971068 Query 68415 TCCAAGGTGAT 68425 || | ||||| Sbjct 971069 TCGAGAGTGAT 971079 >seq13 Length=704413 Score = 159 bits (176), Expect = 6e-34 Identities = 286/418 (68%), Gaps = 0/418 (0%) Strand=Plus/Minus Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883 ||| ||||| |||||||||||| ||||||||| | ||||| |||| || | | Sbjct 569445 GTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTG 569386 Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943 | ||| | |||| | | | || ||| | ||| | |||||| | |||| || Sbjct 569385 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCC 569326 Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003 |||||| || || ||||| |||||| ||| || | |||||| ||||||||||||| Sbjct 569325 GCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 569266 Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063 ||||||||| | ||||||| ||| ||||| || || || || || || Sbjct 569265 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 569206 Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123 | ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| || Sbjct 569205 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 569146 Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183 |||||| || ||||||| || || ||| |||||| |||| | || || ||| ||| Sbjct 569145 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 569086 Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241 ||| | ||||| | | ||| ||| || ||| || ||||| |||||| ||||| Sbjct 569085 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCG 569028 Score = 100 bits (110), Expect = 5e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | |||||| ||||| || ||||||||||| || Sbjct 258701 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 258642 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098 |||| || || || || | || ||| ||||| || ||||||||||||||||| | Sbjct 258641 AGCTTCTCGTTCCCAAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 258584 Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 ||| ||| || ||||||||| |||| || | ||| | |||||| | ||| |||| Sbjct 258583 GCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCT 258524 Query 10159 TTTCGTTGGCGACCGCTTCCTCGACGAT 10186 ||| | |||| ||||| ||| ||| Sbjct 258523 GCTCGATCTCGACGGCTTCGGCGATGAT 258496 >seq10 Length=870310 Score = 141 bits (156), Expect = 2e-28 Identities = 374/559 (67%), Gaps = 28/559 (5%) Strand=Plus/Plus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||| || || ||||| || | | || | || ||||| Sbjct 74786 AGGAAACCAGAGTCGTGCGAGACGATGATCGAGGTGCAGGTCTTGAGCGAGCAGAGGTAG 74845 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | |||||| || |||||| |||||||| ||||| || || ||||| || || ||| Sbjct 74846 TTCTCGAGCCAGGCGACGTTGAGGACGTCCAAATGGTTGGTCGGCTCGTCGAGGAGGAGG 74905 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || || | |||||||||||| | ||||| || ||||| ||||| || ||||| Sbjct 74906 ATGTCGGCCTCGAAGAGGATGGCGCGGGCGAGAGCGAGTTTCATCTTCCATCCACCGGAG 74965 Query 225629 AGGGAGCCGATTGAAACAGAGTGCTTA-GCT--TCGTCAAAGCCG---TACTCCAGGA-G 225681 ||||||||||| | | | | || | ||| | |||||| |||| |||| | Sbjct 74966 AGGGAGCCGATGG---CGGCCTCCTGACGCTCGCGGGTGAAGCCGACCGACTCGAGGACG 75022 Query 225682 CGTCTGGA-TAAT--GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738 | | | | | | ||||| ||| | |||| | | ||| || || |||||| Sbjct 75023 CTGCGGCACTCGTCCTCGCTCTTGAG-GATGCGCTTG---TCCTTGAGGACGAACGAGAC 75078 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACG-CGTCAATGTCGTGGTCCACGTACACCG 225797 | ||| | | |||| | | || |||| | |||||| || ||||| | || Sbjct 75079 G--ATC-------GAGTTCTCCGTCTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACG 75128 Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | |||| || | |||||||||||| | ||| || || | |||||||| | | Sbjct 75129 TGCGGACCTCGTCGGGGGAGGGGAAGCCCTCGACCTGTCCGTTGTCGATCGCACGCATAA 75188 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| |||||||| |||||| | || ||| ||||| | | || ||||||| Sbjct 75189 GGGTCGACTTGCCCGAACCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGAC 75248 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 |||| | | ||| ||||||||||| | || || || || |||||| ||| | || Sbjct 75249 GGAGGGTAGCCGTGTTGAGGAGGATCTTTGCGCCGTAAGCGAGCGAGAACGTGCAGTTGC 75308 Query 225978 ACAGGTCCTCACCCTCCTC 225996 |||||||||| |||||||| Sbjct 75309 ACAGGTCCTCGCCCTCCTC 75327 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 224990 ATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCT 225049 ||||||||| || ||| |||| ||||||| || || |||||||| || |||||||| Sbjct 74226 ATGTACTGGAGCGGAGTCTTGTCGAGGTGGTGGTCGATGTGGTGGAAGGCGTGCTGGGCG 74285 Query 225050 ACGTACGCCATGCGCATGTTGGGATGCTTCCACA---CAGAGCCCCGAGTCGGTTGTGCC 225106 ||||| | ||| || ||| || |||||||||| || |||| | || | | | Sbjct 74286 ACGTAGCCGATGACCAAGTTCGGGTGCTTCCACACCTCACCGCCCTTGTTGGGCTCGGTC 74345 Query 225107 TCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156 ||| || ||||| ||||| ||| || | |||||| | ||| || ||||| Sbjct 74346 TCGGCGACGAGGAGCTTGACGAGGGTCGACTTGCCGGAACCGTTCGGGCC 74395 >seq19 Length=515428 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 10349 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 10290 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 10289 CCCACATTGGGC 10278 >seq16 Length=587835 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 140240 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 140299 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 140300 CCCACATTGGGC 140311 >seq8 Length=938736 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 442111 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 442052 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 442051 CCCACATTGGGC 442040 >seq6 Length=1157922 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 551447 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 551388 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 551387 CCCACATTGGGC 551376 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 556674 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 556615 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 556614 CCCACATTGGGC 556603 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 591297 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 591238 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 591237 CCCACATTGGGC 591226 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 604356 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 604415 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 604416 CCCACATTGGGC 604427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621501418160