Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq13 271 1e-67
seq3 167 4e-36
>seq13
Length=704413
Score = 271 bits (300), Expect = 1e-67
Identities = 553/811 (68%), Gaps = 14/811 (2%)
Strand=Plus/Minus
Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851
|||| ||| |||||||||||||||||||| || ||||||| |||||| |||||||
Sbjct 568319 GTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAC 568260
Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910
| || |||||| | | || || || | || | | | ||||| ||||||
Sbjct 568259 GGCGTACCAGAGCTTCTGGGCGGGGATGGTGC-GCTTGGCGCGACCCTCCTTCTCGTACT 568201
Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970
| || ||| ||||||| ||| ||||||||| || ||||| | ||||
Sbjct 568200 TTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCG 568141
Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030
|||| | ||| ||| |||||| | || ||| | || ||||||||||||||||||||
Sbjct 568140 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCC 568081
Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090
| ||||| ||| | ||| | | | ||| ||| ||| |||||| | || |
Sbjct 568080 AAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 568021
Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150
| | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || |
Sbjct 568020 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 567961
Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210
||||||||||||||||||| || | | | |||| | | ||| || | || |
Sbjct 567960 GCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGA 567901
Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270
|||||||| |||| |||||| ||||| |||||| | || | | | || ||||
Sbjct 567900 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGT 567841
Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330
||| || | ||| | ||||| || |||||||||||| ||||| |||||| ||||
Sbjct 567840 GGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 567781
Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390
| |||||||| || ||| |||||| ||| || ||||| || || ||||| |
Sbjct 567780 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 567721
Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450
| | || ||| | |||||| || || || ||||| |||||||| || ||| |
Sbjct 567720 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACA 567661
Query 245451 GGAACCCGTACGTCTGGAGCAGAGC-GTCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508
|| |||||||| || | | || ||| |||| ||||||||||| ||| | ||| |
Sbjct 567660 TGAGGTTGTACGTCTCGATC-GCGCGGTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 567604
Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564
| | |||||| ||||||| || |||| | || ||| | | ||||| ||
Sbjct 567603 CGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 567547
Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595
| || ||||||||||||||||| || |||||
Sbjct 567546 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 567516
Score = 174 bits (192), Expect = 3e-38
Identities = 616/945 (65%), Gaps = 78/945 (8%)
Strand=Plus/Minus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| |||||| || || ||||||| || ||| | |||||||||||||| ||||||
Sbjct 569486 ACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTACATGCCCGTCTTG 569427
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| || | ||| ||| || |||||| | ||| |||| | ||| ||
Sbjct 569426 AGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT-----------GG 569378
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915
||| | || | || || |||||| ||||| |||||||| ||| | |||| || ||
Sbjct 569377 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCGCGGTC 569320
Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975
||||| | | ||||| | |||| || || ||||| || | |||||||||||| ||||
Sbjct 569319 GGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGATGCGCTT 569260
Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035
||| | ||||||| || || |||||| | |||||| ||||| |||||| | | |
Sbjct 569259 GAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTT 569200
Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTT 244092
||| |||||||||||||| ||| || | ||| ||| ||| |||
Sbjct 569199 CTTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 569143
Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152
|| ||||| ||||| || | || |||||||| ||||| |||| || ||||||
Sbjct 569142 GACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTC 569083
Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC---GCAGTCGGCATGGGCG---A 244206
|| ||| || ||| || ||||| || || || || || ||||| |||| |
Sbjct 569082 GAACGCCTCGTTGAAGCCGAGGATCTG-GC--TGGTCGAGGCGGTAGGCATCGGCGCGCA 569026
Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTC 244266
||| ||| || ||| | | ||||||| |||| | ||| ||| ||| | ||
Sbjct 569025 CACGAGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCT--TCTCCTTCAACTC 568978
Query 244267 CCACATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325
| | || | |||||| ||| | ||| | ||||| || |||||| || || |
Sbjct 568977 GGCCCAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGT 568919
Query 244326 TGCTGACGGG---GCTGC------CCTCGTAGGTCGGGTAGGGACCG---TCGC---GCT 244370
||| |||| || || ||| ||| | |||||| ||| |||| | |
Sbjct 568918 GGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGCCAGGGT 568859
Query 244371 GGGCCA--GCTTA-----CAGC--TCTCG---------TCGAGGGCGGCGTAGTAGATGG 244412
| || | || || ||| | ||| |||| ||||||| ||||| |
Sbjct 568858 GCGCGATGGCGTAGTCGCGAGCCATGTCGCACGACGACTCGATCGCGGCGTGATAGATCG 568799
Query 244413 TCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATC 244471
||||||||||| ||| | || ||| || | | || || ||| || | || |
Sbjct 568798 TCTCGAAGATCTGGACGTTGAGGTGGCGCGCTTCAGGCG-AGTCGAACGGCAGGCGGAGG 568740
Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531
||||||| ||||||| || |||||||| ||||| ||||| || | ||| || ||||
Sbjct 568739 GCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTG 568680
Query 244532 GAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGG 244591
|||| ||| || |||||||| ||||| ||||||| | ||| ||||||
Sbjct 568679 CTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAGGTTGTAC 568620
Query 244592 GTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636
|||| | |||||||||| |||| || ||||||||||||
Sbjct 568619 GTGACGACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 568575
Score = 145 bits (160), Expect = 1e-29
Identities = 227/315 (72%), Gaps = 15/315 (5%)
Strand=Plus/Plus
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
|||||| |||||| | ||||| || || || | ||||||||||||||||| |||||
Sbjct 258396 GAACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 258455
Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCA--TCATCACGGAGGCC 42923
| |||||| || | || || | || ||| | ||| ||||| | || |||
Sbjct 258456 G---CACCTCGAGCGCCGACCAGCGCCTCACCGCGTC--GCCCAAATCATCGCCGAAGCC 258510
Query 42924 GTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983
|| ||||||||| |||| ||||| ||| | | ||||||| | || ||||||||||
Sbjct 258511 GTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAA- 258569
Query 42984 CACGA-CCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGG 43041
| ||| ||||||| | |||||||| ||| |||||| |||| || | ||| | |||
Sbjct 258570 CGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGG 258629
Query 43042 GTCTCAGCCGCCTCTACAACACGCCGTG--CCCCTTCGACTTTATGGAGAACATCTCGTT 43099
| || | || |||| | |||| | ||| |||||||||||||||| |||||| |
Sbjct 258630 GAACGAGAAG-CTGTACA--ATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGAT 258686
Query 43100 GGAGGGCAAGACCAA 43114
|||||||||||||||
Sbjct 258687 GGAGGGCAAGACCAA 258701
Score = 96.9 bits (106), Expect = 7e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||| || |||||||| |||||| | || ||| |
Sbjct 258165 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTG 258224
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|| | || | ||||| || || |||| |||||||||||||||||||| ||| | |||
Sbjct 258225 TTTGCGGAACGACTGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 258284
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805
||||| ||||||||||| || || | | ||||||||| | || |||||
Sbjct 258285 GCCTCGATCTTCTGGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTCTC 258337
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| |||||||||||||| || |||||||| ||||| |||||| ||| |||||| |
Sbjct 257838 CTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCG 257897
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529
||||||||| ||||||||||| |||||||| ||||||||
Sbjct 257898 GCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 257944
>seq3
Length=1525690
Score = 167 bits (184), Expect = 4e-36
Identities = 227/311 (73%), Gaps = 7/311 (2%)
Strand=Plus/Minus
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
|||||| |||||| | ||||| || || || | ||||||||||||||||| |||||
Sbjct 1123958 GAACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 1123899
Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924
| |||||| || | |||||| || |||| | ||||||| ||||| |
Sbjct 1123898 G---CACCTCGAGCGCC-GCCCTCACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGG 1123843
Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984
| ||||||||| | |||||||||||| || |||||||||| || |||||||||||
Sbjct 1123842 TCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 1123783
Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043
||||||||||||| |||||||| ||| || ||||||| | | ||| || |||
Sbjct 1123782 GCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCA 1123723
Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103
|| | ||||| ||| | | ||| |||||||| ||||||| |||||| |||||
Sbjct 1123722 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGAG 1123664
Query 43104 GGCAAGACCAA 43114
|||||||||||
Sbjct 1123663 GGCAAGACCAA 1123653
Score = 152 bits (168), Expect = 1e-31
Identities = 141/176 (80%), Gaps = 6/176 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691
|| |||||| |||||||||| || |||||||||| ||||||| | |||| || |
Sbjct 1124228 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGA---CGACCGCTCC 1124172
Query 42692 GT--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749
|| |||||||| | || || || || ||||||||||||||||||||||||| ||| |
Sbjct 1124171 GTCTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCG 1124112
Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805
||||| |||||||||||||||||| || | | |||||||||||||||||||||
Sbjct 1124111 TTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 1124056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338279269280
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