Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 seq39 84.2 5e-11 >seq2 Length=1846957 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| | || | || ||||| | || || || ||||| || |||| Sbjct 971180 CATG-CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGT 971238 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||||||| ||||| || | || || || |||||||||| ||||| || Sbjct 971239 CGCTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGG 971298 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| || || ||||| || || || || ||||| || || | || || | Sbjct 971299 GAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACT 971358 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 971359 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 971410 Score = 100 bits (110), Expect = 7e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | || ||||| || | || ||||| ||||||||||| | Sbjct 970885 CATG-CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAAT 970943 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || ||||| || | || || || |||||||||| |||||||| Sbjct 970944 CCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGG 971003 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| || |||||||| || || || || ||||| || || | ||| ||| | Sbjct 971004 GAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACT 971063 Query 288422 CTACTTCGAGCGTGATC 288438 | || ||||| |||||| Sbjct 971064 CGACCTCGAGAGTGATC 971080 >seq39 Length=13956 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTA 325402 ||||| || ||||| | | || |||||||||||| | ||| | | ||||||||| Sbjct 6295 TCCTTGCCGCCCTGGAGACGCGTACCGAACTGGCCGTTCGGGTCGAGCACGTTGATGTTG 6236 Query 325403 TTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCA 325462 ||||| |||||| | | ||| || ||| |||||||| || ||||| || || ||||| Sbjct 6235 TTGCTGCCGACAAAGTTCTGCGCGAGGCCGACGATGGTGCCCTGCAGCGAGGCGTCGCCG 6176 Query 325463 TGGTGATAGGC 325473 ||||| || || Sbjct 6175 TGGTGGTACGC 6165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653221082884