Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq13 116 8e-21 seq39 87.8 4e-12 >seq13 Length=704413 Score = 116 bits (128), Expect = 8e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 243499 CAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGC 243558 ||||||||| | ||||| || || | ||| |||||||| | ||||| | || | Sbjct 258493 CAAATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCC-GT 258551 Query 243559 CGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCG 243617 |||||| || ||||||||| | |||||| ||||||||||||| ||||| || ||||| Sbjct 258552 CGGCTTGATCGGCATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCG 258611 Query 243618 CATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTAT 243677 | | |||||||||| | ||||| ||||||| || ||||||| || | |||||| Sbjct 258612 ATTGCTTGTCGCGCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTAT 258671 Query 243678 GGAGCTCATTTCG 243690 |||| | || ||| Sbjct 258672 GGAGATGATCTCG 258684 >seq39 Length=13956 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||| || || || || || || ||||| || ||||| | | || ||||||| Sbjct 6325 TTCGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAAC 6266 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 ||||| | ||| | | ||||||||| ||||| |||||| | | ||| || ||| Sbjct 6265 TGGCCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCG 6206 Query 297554 ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC 297594 |||||||| || ||||| || || ||||| ||||| || || Sbjct 6205 ACGATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGC 6165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878897809300