Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq13 183 4e-41
seq1 96.9 4e-15
seq21 91.5 2e-13
>seq13
Length=704413
Score = 183 bits (202), Expect = 4e-41
Identities = 489/736 (66%), Gaps = 11/736 (1%)
Strand=Plus/Minus
Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649
||||||||||| |||||| | || | |||||||| |||| || ||| | || | |
Sbjct 568312 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 568253
Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708
|||| | || | ||| || | ||| ||||| || ||||||| |||||||||| |
Sbjct 568252 CAGAGCTTCTG-GGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 568194
Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768
||| | | ||||| || || | |||| ||| || || |||| | ||||||||
Sbjct 568193 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 568134
Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828
||| | ||| | || || ||| ||||||| |||||||||||| |||||||| || ||
Sbjct 568133 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 568074
Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 568073 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 568014
Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945
|| | ||| || ||||||||||| || ||||| | |||| | ||| ||
Sbjct 568013 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 567954
Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005
|| |||||| || || | ||| ||| || | ||||| ||||| || ||||| ||
Sbjct 567953 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 567894
Query 115006 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATG 115063
| || | ||| || || || ||| ||||| || | || | || | |||||
Sbjct 567893 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGGATC 567836
Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123
| || || || |||||| ||| ||||| |||||||| | |||| || |||||
Sbjct 567835 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 567776
Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183
|| || ||||||||||| |||| | | || |||||||| ||| | || ||
Sbjct 567775 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 567716
Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 115242
|| || || ||||||||||| || || | |||||| | || |||| | |||||
Sbjct 567715 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 567657
Query 115243 ATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 115302
| ||| ||||| | || | |||||| || ||||| || |||| || ||| |||||
Sbjct 567656 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 567597
Query 115303 AAACATGTATTGGGGT 115318
| ||||| || |||
Sbjct 567596 GAGCATGTGCTGCGGT 567581
>seq1
Length=1973210
Score = 96.9 bits (106), Expect = 4e-15
Identities = 164/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAA 11015
||| |||| |||||||| || |||||||| | ||| ||||| || ||| || |
Sbjct 1712598 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 1712539
Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075
| ||| | || ||||| | ||||||||||||| || ||||| || || || | ||
Sbjct 1712538 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 1712480
Query 11076 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135
| |||| || |||||||||| || ||| || ||| | ||| ||||||||| |
Sbjct 1712479 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 1712420
Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190
|||| || || || || || | ||| | ||| || || |||||| |||||||
Sbjct 1712419 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACC 1712365
>seq21
Length=241866
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 8796 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855
|| |||||| |||| || | |||||||||||||| ||||| || || | |||||||
Sbjct 75446 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGTGACTACGTCGAGGGCATGTGG 75505
Query 8856 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 8915
| | | || || || || || | ||||| | |||| ||||||| || ||||| ||| ||
Sbjct 75506 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 75565
Query 8916 GTCAGGGAGTTCGTTGAG 8933
||| | ||||| || |||
Sbjct 75566 GTCCGCGAGTTTGTCGAG 75583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353017580240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |