Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq13 122 9e-23
seq3 104 2e-17
seq2 98.7 1e-15
>seq13
Length=704413
Score = 122 bits (134), Expect = 9e-23
Identities = 301/446 (67%), Gaps = 17/446 (4%)
Strand=Plus/Minus
Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGC 154077
|||||||||||||||| || || | ||||| ||| | || || ||||| || |
Sbjct 568008 AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTC 567949
Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137
|||| ||||||| |||| || | |||||| | ||||| | |||||| | |||| | |
Sbjct 567948 CCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCG 567889
Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197
| |||||| || ||| | ||| ||||| | | || | | ||
Sbjct 567888 AGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 567829
Query 154198 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCC 154255
| |||||||| ||||| ||| || ||| ||||| ||| ||||| |||||||||
Sbjct 567828 CGATGCCGCCTGCCGT-CTTGGAGATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCC 567771
Query 154256 GTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCG-CG 154314
||||| ||||| | || | ||| ||||| | | ||||| |||| ||
Sbjct 567770 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCG 567712
Query 154315 TTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGG 154373
| || || ||||| || || |||||||||||| | |||| |||| ||
Sbjct 567711 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAG----TACCGCTCCGACATGAGG 567656
Query 154374 T---ACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATG 154430
| |||| ||||| ||| || || || |||||||| ||||||| |||||||||||||
Sbjct 567655 TTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATG 567596
Query 154431 AGCATGTGCTGCGGACGTTCGGCGAC 154456
|||||||||||||| || ||||| ||
Sbjct 567595 AGCATGTGCTGCGGTCGCTCGGCCAC 567570
>seq3
Length=1525690
Score = 104 bits (114), Expect = 2e-17
Identities = 217/312 (70%), Gaps = 11/312 (4%)
Strand=Plus/Minus
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|||||| | || |||||||||||||| || ||||| |||||||| |||||| || |
Sbjct 1123957 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 1123900
Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
||| | | || || | | | |||||| || | |||| || ||||||||
Sbjct 1123899 -CGCACCTCGAGCGCCGCCCTC-ACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGT 1123842
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680
| ||||| | ||||| | |||| |||||||| ||| |||| | ||||||||| |
Sbjct 1123841 CGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAG 1123782
Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGG 52739
|| || |||||| |||||||||||||||| || || || || ||| ||| || ||
Sbjct 1123781 CGACCTC-ATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCA-CT-TGG 1123725
Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798
|| | | ||| || | || || ||||| || || ||| | | || ||| | ||
Sbjct 1123724 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 1123665
Query 52799 GGGCAAGACCAA 52810
||||||||||||
Sbjct 1123664 GGGCAAGACCAA 1123653
>seq2
Length=1846957
Score = 98.7 bits (108), Expect = 1e-15
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || ||||| | ||| || | ||| | | |||||||| || ||||||||||||||
Sbjct 971183 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 971242
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || |||||| || || || || | |||| | ||||| ||||| |||||
Sbjct 971243 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 971302
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| || || ||||| ||| | || | || | ||| || | |||||| | |||||
Sbjct 971303 GATTCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCG 971360
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616
||||||| || | || || || || || || || || || ||||||||||
Sbjct 971361 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 971412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261916144160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |