Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13 122 9e-23 seq3 104 2e-17 seq2 98.7 1e-15 >seq13 Length=704413 Score = 122 bits (134), Expect = 9e-23 Identities = 301/446 (67%), Gaps = 17/446 (4%) Strand=Plus/Minus Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGC 154077 |||||||||||||||| || || | ||||| ||| | || || ||||| || | Sbjct 568008 AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTC 567949 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 |||| ||||||| |||| || | |||||| | ||||| | |||||| | |||| | | Sbjct 567948 CCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCG 567889 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197 | |||||| || ||| | ||| ||||| | | || | | || Sbjct 567888 AGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 567829 Query 154198 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCC 154255 | |||||||| ||||| ||| || ||| ||||| ||| ||||| ||||||||| Sbjct 567828 CGATGCCGCCTGCCGT-CTTGGAGATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCC 567771 Query 154256 GTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCG-CG 154314 ||||| ||||| | || | ||| ||||| | | ||||| |||| || Sbjct 567770 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCG 567712 Query 154315 TTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGG 154373 | || || ||||| || || |||||||||||| | |||| |||| || Sbjct 567711 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAG----TACCGCTCCGACATGAGG 567656 Query 154374 T---ACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATG 154430 | |||| ||||| ||| || || || |||||||| ||||||| ||||||||||||| Sbjct 567655 TTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATG 567596 Query 154431 AGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||| || ||||| || Sbjct 567595 AGCATGTGCTGCGGTCGCTCGGCCAC 567570 >seq3 Length=1525690 Score = 104 bits (114), Expect = 2e-17 Identities = 217/312 (70%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || |||||||||||||| || ||||| |||||||| |||||| || | Sbjct 1123957 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 1123900 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | |||||| || | |||| || |||||||| Sbjct 1123899 -CGCACCTCGAGCGCCGCCCTC-ACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGT 1123842 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680 | ||||| | ||||| | |||| |||||||| ||| |||| | ||||||||| | Sbjct 1123841 CGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAG 1123782 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGG 52739 || || |||||| |||||||||||||||| || || || || ||| ||| || || Sbjct 1123781 CGACCTC-ATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCA-CT-TGG 1123725 Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | ||| || | || || ||||| || || ||| | | || ||| | || Sbjct 1123724 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 1123665 Query 52799 GGGCAAGACCAA 52810 |||||||||||| Sbjct 1123664 GGGCAAGACCAA 1123653 >seq2 Length=1846957 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| | ||| || | ||| | | |||||||| || |||||||||||||| Sbjct 971183 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 971242 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| || || || || | |||| | ||||| ||||| ||||| Sbjct 971243 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 971302 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || | ||| || | |||||| | ||||| Sbjct 971303 GATTCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCG 971360 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||||| || | || || || || || || || || || |||||||||| Sbjct 971361 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 971412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261916144160