Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 168 6e-37
seq13 105 6e-18
seq3 84.2 2e-11
>seq2
Length=1846957
Score = 168 bits (186), Expect = 6e-37
Identities = 177/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| || | |||||||| ||| | |||||||| || || || ||||| ||||
Sbjct 971184 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 971243
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||||| || || ||||| || || ||| ||||||| |||||||| ||||||||
Sbjct 971244 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 971303
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||||| |||| |||| |||||||| | ||||||
Sbjct 971304 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGAC 971362
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|||| ||| | || |||||||| || || || || || ||||||||||
Sbjct 971363 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 971412
Score = 107 bits (118), Expect = 2e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||||||||| | || | ||||| || | |||||||||||| || || ||||||||
Sbjct 970456 TCCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGA 970515
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| |||||| || || ||||| || || ||| ||||||| |||||||| ||||||||
Sbjct 970516 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 970575
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037
|| |||||||||||| ||| || |||||
Sbjct 970576 GATACCCTCCTTGTCCTGGATCTTAGCCTTGA 970607
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996
||| |||| || |||||| | || || ||||| || |||||| ||||||| |||||||
Sbjct 1252244 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 1252185
Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053
||||| || ||||||||||||||| ||| || ||||| | | ||| |||||
Sbjct 1252184 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTCGTAGACCGTGTC 1252128
>seq13
Length=704413
Score = 105 bits (116), Expect = 6e-18
Identities = 213/315 (68%), Gaps = 17/315 (5%)
Strand=Plus/Plus
Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC--- 47300
|||||||| |||||| | ||||||||||| |||||| |||||||||| ||| || |
Sbjct 258397 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 258456
Query 47301 -AACACTAGAGTCGATCAAAAGTTGGACGTGCC-CACCG--TCAGCGACATGTTTGCCGA 47356
| | | || | ||| || | ||| ||||| || | | || | |||||
Sbjct 258457 CACCTCGAGCGCCGACCA----------GCGCCTCACCGCGTCGCCCAAATCATCGCCGA 258506
Query 47357 AGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAAT 47416
|||||||| || ||| ||| || | | || || |||||| || | || ||
Sbjct 258507 AGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCAT 258566
Query 47417 GAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCT 47476
||||||| | ||| || |||||||||| || ||||| ||||| |||| || |||
Sbjct 258567 GAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCT 258626
Query 47477 AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536
| | ||| | ||| | ||||||| || ||||| |||||| | | || ||| |
Sbjct 258627 TGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGAT 258686
Query 47537 CGAGGGCAAGACCAA 47551
||||||||||||||
Sbjct 258687 GGAGGGCAAGACCAA 258701
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096
||| |||||| | || ||| | ||||||| ||||| |||||||||||||| |||||
Sbjct 569172 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCG 569113
Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156
| || | |||| ||| |||||||||||| ||||||| ||||| |||||
Sbjct 569112 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCT 569053
Query 146157 CGTCGTAGCGGTAGGCAT 146174
|||| |||||||||||
Sbjct 569052 GGTCGAGGCGGTAGGCAT 569035
>seq3
Length=1525690
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| ||| | || | || |||||||| || || ||||||||
Sbjct 1175433 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1175374
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || ||||| || || ||| |||| | |||||||| ||||||||
Sbjct 1175373 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1175314
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037
|| |||||||||||| ||| || |||||
Sbjct 1175313 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1175283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500336386720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |