Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-22 seq3 113 7e-20 >seq13 Length=704413 Score = 122 bits (134), Expect = 1e-22 Identities = 332/499 (67%), Gaps = 16/499 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || ||||||| |||||| ||||||| | | | | || ||||||||||| Sbjct 569493 CTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTACATGCC 569434 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || || |||| ||| ||||| | |||||| || | || | || | | || Sbjct 569433 CGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 569374 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 | | ||| | ||| || ||||| ||||||||| || ||||| || || |||| Sbjct 569373 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATG-AACGCGCCGCGGTCGGCGG 569315 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG- 204076 | | | ||| | | ||| ||||| ||||||||||| |||||| | | | | || | | Sbjct 569314 CGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGATG-CGCTTGAGC 569256 Query 204077 -TGTTGAGGCACAT-CTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 || | || || | |||| || |||||||||||||| || || | | || Sbjct 569255 TCGTCGGGG---ATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 569199 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || || | || ||||| ||| || || || || | || |||||||| | Sbjct 569198 TTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACG 569139 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || |||| || || | |||||| | | |||| ||| | || |||||| Sbjct 569138 ACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAAC 569079 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC---CAGGAGC 204310 ||||||||| ||||| ||||| ||| ||| || ||||| || || || |||| Sbjct 569078 GCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCACACGAGC 569019 Query 204311 AGGGAGTTGCGCACACCGT 204329 |||||||| | |||| Sbjct 569018 ---GAGTTGCGGATGCCGT 569003 Score = 105 bits (116), Expect = 1e-17 Identities = 351/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 |||||| || |||||| |||||| ||| | | |||| || || || | | | || Sbjct 568103 CTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTC 568044 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| | ||| || || || | |||||||||||||||||||| | Sbjct 568043 CTTGCCGTGGTTCTTGCGGAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCACGGCTCGA 567985 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||| || | |||||| || |||||||| || ||| | | | Sbjct 567984 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGT 567925 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| | || || ||||| || | | ||||| | | |||||||||| | |||| Sbjct 567924 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 567865 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 ||| || || | | |||| ||| | ||| || ||||| | ||||| || Sbjct 567864 ACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGA 567805 Query 205464 TCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 | | |||||| ||||| || ||| ||||||||| |||| || |||||| || || Sbjct 567804 TGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 567746 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----GTGCCCGCGTGGAAGAGCGTGGG 205578 || || ||||||| | |||| || | || ||||| |||| ||||||||| || Sbjct 567745 ACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGG 567690 Query 205579 GCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCT 205634 ||||| | ||| | ||||| ||| |||| ||||| | | ||| | Sbjct 567689 CGACGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGT 567634 Query 205635 CCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | | ||| |||||| || || | |||| | ||||| | ||| || |||| ||| Sbjct 567633 CAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTC 567576 >seq3 Length=1525690 Score = 113 bits (124), Expect = 7e-20 Identities = 215/313 (69%), Gaps = 13/313 (4%) Strand=Plus/Plus Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721 ||||||||||||||||| || || |||||||| |||| ||||||| | ||| ||| Sbjct 1123653 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGTTCTCCTTGTGGTAG 1123712 Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781 |||| || || || | ||||| | ||| || ||||| |||||||| ||| Sbjct 1123713 ATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGGCAC 1123772 Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841 || | || | ||| || || | ||| | ||||| ||||| |||| || ||||| | | Sbjct 1123773 ATGAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTCTTGC 1123832 Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TCG----TACCCCGGCTTGC 159896 || ||||||||||| ||| | || || ||| ||| ||| | |||| || Sbjct 1123833 TCGATCTCGACCGCCTCGCGGATGATGCGCTCGAC-CGTGTCGGGGTGAGGGCGGC--GC 1123889 Query 159897 CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAG 159956 | | ||| | || |||||||| ||||||||| ||| || || ||||| || | Sbjct 1123890 TC-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGCG 1123944 Query 159957 AGATGAACTCGTT 159969 |||||| |||||| Sbjct 1123945 AGATGAGCTCGTT 1123957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154424723680