Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq6 123 3e-23 seq12 114 1e-20 seq3 96.9 4e-15 seq18 86.0 7e-12 >seq2 Length=1846957 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || | |||||||||||| | |||| |||||| ||||| ||||||||| Sbjct 971182 TGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGC 971241 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| ||||||||||||||||||| | Sbjct 971242 TGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 971301 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| ||||| ||||| ||| | | | ||||| || || Sbjct 971302 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCG 971360 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 971361 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 971410 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| ||| ||| || ||||| ||||| || || || ||||| | Sbjct 970468 ACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCC 970527 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| ||||||||||||||||||| || | | |||||| Sbjct 970528 GTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTT 970587 Query 46498 GTCCATGATCTTCTTCTTGA 46517 |||| |||||| ||||| Sbjct 970588 GTCCTGGATCTTAGCCTTGA 970607 Score = 102 bits (112), Expect = 9e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 ||||||| || ||||| |||| ||||||||||| || ||||| ||||||||||||| Sbjct 1252244 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 1252185 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC 46533 ||||| ||| | || |||||||||| |||||| |||||| ||||| |||||||| Sbjct 1252184 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTCGTAGACCGTGTC 1252128 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || |||||||| || || | Sbjct 970887 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCG 970946 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| ||||||||||| ||||||| | Sbjct 970947 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAG 971006 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||| ||| ||||| ||||| ||| | | | |||||| ||| || Sbjct 971007 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGACGACTCG 971065 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 971066 ACCTCGAGAGTGAT 971079 >seq6 Length=1157922 Score = 123 bits (136), Expect = 3e-23 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 265816 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 265875 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||| |||||||||||||| || | || |||||||||| |||||| Sbjct 265876 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 265923 >seq12 Length=765624 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 75749 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 75690 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 75689 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 75631 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 75630 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 75594 >seq3 Length=1525690 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || ||||| ||||| || | Sbjct 1175875 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 1175816 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| | Sbjct 1175815 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAG 1175756 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | | |||||||||| |||||| ||||| Sbjct 1175755 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1175723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 1175433 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1175374 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || ||||||||||| || ||||| || | ||||||||||||| || Sbjct 1175373 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1175314 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | |||||||||| |||||| ||||| Sbjct 1175313 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1175283 >seq18 Length=573879 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTT-TTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || | | ||| ||| | |||||||| || || ||||| |||| || Sbjct 149769 ACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTC 149711 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| |||| |||| |||||||||||||| ||| |||| ||||||| Sbjct 149710 GAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTG 149651 Query 46504 GATC 46507 |||| Sbjct 149650 GATC 149647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237848892560