Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 6e-31
seq13 123 2e-23
seq12 102 8e-17
seq3 102 8e-17
seq6 93.3 4e-14
>seq2
Length=1846957
Score = 149 bits (164), Expect = 6e-31
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | |
Sbjct 971410 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 971351
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || || | ||||| |||||||| || |||||||
Sbjct 971350 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 971292
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||||||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 971291 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 971232
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || || ||| ||||| || | ||| | || |||
Sbjct 971231 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 971183
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || || ||||||| ||||| | || | |||||| ||
Sbjct 970599 AAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAG 970540
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| || || ||||||||||| || || | ||||||||
Sbjct 970539 CAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACGCTGCAC 970480
Query 38448 TTGGTGCTGCGT 38459
||||||| |||
Sbjct 970479 CTGGTGCTTCGT 970468
>seq13
Length=704413
Score = 123 bits (136), Expect = 2e-23
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || || ||||| || || ||||||||| | | |||||| || | ||| | |||
Sbjct 257945 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTC 257886
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
|||| || ||||||||||||||||| |||||||| ||||| || |||||| |||
Sbjct 257885 CACCAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGAT 257826
Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395
||| || ||||||||||| ||| || |||||||| | | |||||| || | ||||
Sbjct 257825 GAAGTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAGATGTCC 257768
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004
||| |||||||||||||| | ||| || ||||| ||||| || || | |||||| |||
Sbjct 258335 GAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAGCC 258276
Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064
|| ||||||| ||||||||| || |||||||| ||||| || || | ||| |||
Sbjct 258275 GGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCGCG 258216
Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
| | |||||| ||||||||||| ||||||||
Sbjct 258215 AGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTT 258180
>seq12
Length=765624
Score = 102 bits (112), Expect = 8e-17
Identities = 125/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338
|||||| |||| |||||| | | |||| | | |||| | || | || |||| ||
Sbjct 75594 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 75652
Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398
||| ||||| || ||| | ||||| ||||| ||||| | ||| ||||| ||||| || ||
Sbjct 75653 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 75712
Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| ||||||||| |||||||||||||| ||||| |||| || ||
Sbjct 75713 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCA 75760
>seq3
Length=1525690
Score = 102 bits (112), Expect = 8e-17
Identities = 114/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|||||||| | |||||| || |||||||| || |||| ||||| ||| || ||||||
Sbjct 1124068 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 1124127
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| |||||||||||| ||||| || || || ||||||||||| || | | | |
Sbjct 1124128 ATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGAGCGGTCGTCCGAG 1124187
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104
|||||| |||||||| |||||||| ||||
Sbjct 1124188 ATCCAGGTGAGCGCCCACTCGGCCTTCTTCT 1124218
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| |||||||| || ||||||| ||||| || || | |||||| ||
Sbjct 1175731 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1175790
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| || || || || ||||||||||| || || |||| || ||
Sbjct 1175791 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1175850
Query 38448 TTGGTGCTGCGT 38459
| |||||||||
Sbjct 1175851 CTCGTGCTGCGT 1175862
>seq6
Length=1157922
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| ||||||| ||||| || || | ||| |||||
Sbjct 265923 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 265864
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| || |||||||||||||| ||||| |||| || ||
Sbjct 265863 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 265804
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
| || || ||| | | ||||||
Sbjct 265803 CTCGTCCTCCGTCTCCGCGGCGGC 265780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172312331520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |