Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8 277 2e-69 seq15 136 5e-27 seq7 132 6e-26 >seq8 Length=938736 Score = 277 bits (306), Expect = 2e-69 Identities = 643/965 (67%), Gaps = 7/965 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || || || | |||||| || ||||| | || ||||| ||||| ||||| || ||||| Sbjct 212286 TCGCCGGTGAGGATGGCAGCCTGGACGGCGGCGCCGTACGCGACGGCCTCGTCCGGGTTG 212227 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||| || | || || | | | || | |||| Sbjct 212226 ATCGACTTGTTGGGCTCCTTGCCGCCGAAGAAGTCGGAGACGAGCTTCTGGACACGCGGG 212167 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||| | || || || | || | || || ||||| ||| Sbjct 212166 ATACGGGTCGAGCCGCCGACGAGGACAATCTCGTGGACCGACTGCTTGTCAATCTTCGAG 212107 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA-CGGAACAAGTCCATACACAGTTC 7248 || || || || ||||| || ||||| | | | ||||| | |||| || || || Sbjct 212106 TCGCGGAGGACCTTCTCGACGGGCTCCAT-CGTCGAGCGGAAGAGGTCCTGGCAGAGCTC 212048 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| || || || ||||| || || || ||||| || | ||| ||| | | ||| || || Sbjct 212047 CTCGAAGCGGGCGCGGGTGATCGAGGTGTAGAAGTCGATGCCCTCGAAGAGCGAGTCGAT 211988 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | ||| || | || ||||| |||||||| || || || || Sbjct 211987 CTCGATGGTGGTCTGGGCGGCCGACGAGAGGGTGCGCTTGGCGCGCTCGCAAGCGGTGCG 211928 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||| || ||||| || | ||| || | || ||||| | || || || ||||| Sbjct 211927 GAGACGGCGGAGGGCGCGGGCGTTCGACGAGAGGTCCTTCTTGTTCTTGCGCTTGAACTC 211868 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||||| | ||| | || || || ||||| || | ||| || || || Sbjct 211867 GGCGACAAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCGCCGAGGTGGGTGTCTCC 211808 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || ||||| ||||| || ||||| || | || || | | | ||| || || ||||| Sbjct 211807 GGCAGTCGCCTTGACCTCGAAGATGCCCTCCTCGATCGTGAGGAGCGAGACGTCGAACGT 211748 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 || || |||| |||||| ||||| |||||| | ||| | || ||||| ||||| || Sbjct 211747 GCCGCCGCCCAAGTCAAAGATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCC 211688 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||||||||| || || || || || || || || || || || ||| ||||| | || Sbjct 211687 GTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGAGAT 211628 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | || || || || || || || ||||| ||||| |||||||| ||||| || || Sbjct 211627 CAAGCCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGAC 211568 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAG 7788 ||| |||| | ||| | ||||| || | || || | || ||||| ||| || Sbjct 211567 GACGGCGTTGGCGACCGTGCCGCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGAGGAG 211508 Query 7789 AACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTC 7848 |||||||| || ||||| || | || |||| ||| || || || | || || Sbjct 211507 GACCATCGACGAGATCTCCTCGGGCGTGAACTCCTTCTGCTCGCCCTTGTACTCGACCGA 211448 Query 7849 AATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGT 7907 || ||||| || ||| || | ||| ||||| ||| ||| | ||||| ||| Sbjct 211447 GATGATGGGCTTGCCCG----ACTTGTCGATGACCTTGAACGGCCAGTGCTTCATGTCGG 211392 Query 7908 CTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGT 7967 ||||||| ||| | |||||| | |||||| || ||||| || || || || ||| Sbjct 211391 ACTGGACCTCGGCGTCGGCAAACTTGCGTCCGATGAGGCGCTTGGCGTCGAAGACGGTGC 211332 Query 7968 TTTTG 7972 | ||| Sbjct 211331 TGTTG 211327 >seq15 Length=665062 Score = 136 bits (150), Expect = 5e-27 Identities = 523/812 (64%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | || |||||| ||||| | || ||||| ||||| ||||| |||||||| ||| Sbjct 663772 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCGGGGTTGATC 663713 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || || || | ||| || | || || | | || || || ||||| Sbjct 663712 GACTTGTTGAGCTGGCGGCCGCCGAAGAACTCGGAGACGAGCGACTGGATCTTGGGGATA 663653 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC- 7191 || ||||| |||||||| | || || || | || || || || |||||||| | ||| Sbjct 663652 CGGGTCGAGCCACCGACGAGGACAATGTCGTCAACCTTGGACTTGTCGATCTTGGCGTCC 663593 Query 7192 -TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || || | | | |||| || || | |||||| ||| | | || Sbjct 663592 TTCAAGACGCGCT----CGACGGGGTCGAGGGTCGAGCGGAAC--GTCGCGGCGTTGATC 663539 Query 7249 --CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 |||||| || ||||| | || || | |||| || ||| | | | | ||| || Sbjct 663538 TCCTCAAAGCGGGCACGCGAGATCGAGGCCGAGAAGTCCTGGCCCTGGAAGAGCGAGTCG 663479 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 | || | ||| || || || || || || | || ||||| || ||||| ||||||| Sbjct 663478 ACCTCGACGGTGGTCTGGGTGACG--GACGAGAGGGTGCGCTTGGCACGCTCGCACGCCG 663421 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | ||| || || || || | || || || || || ||| || || | || Sbjct 663420 AGCGGAGACGGCGGAGCGCGCGGGCGTCGCCCGAGATGTCGAGCTTGGTCTTGCGCTCAA 663361 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 |||| | |||||| |||| |||| | || || || ||||| || | ||| || Sbjct 663360 ACTCCTTCTTGAAGTGCTCGA-GGAGCGTGTTGTCAAAGTCCTCACCGCCGAGGTGGGTG 663302 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || ||||| ||||| |||||| || || || | | ||| ||||| Sbjct 663301 TCTCCGGCCGTCGCCTTGACGGCAAAGACGCCACCGGTGATCGAGAGGAGCGAGACATCG 663242 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT 7596 ||||| || || || ||||| || ||||| || || | || | | ||| || Sbjct 663241 AACGTGCCGCCTCCGAGGTCGAAGATGAGGACAATCTTCTCCTTCTTCGACTTCTCGGTC 663182 Query 7597 --CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||||||||||| || ||||| || || || || || || || || | Sbjct 663181 GCCTCGCCGAGACCGTACGCGATGGCAGCCGCGGTGGGCTCGTTGATGATGCGGAGGACG 663122 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | |||||||| || || | || || || |||| | || ||||| ||||| |||||| Sbjct 663121 TCGAGGCCAGCGATCGTGCCAGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAG 663062 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || |||||||| | ||| || | | |||| | ||| || | | | || || | || Sbjct 663061 GCAGGGACCGTGATGACGGCCTTCTTGACCTCCTTGCCAATCTTGGCCTCGGCCGTCTCC 663002 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || | |||| |||||||| | || ||||| Sbjct 663001 TTGAGCTTGGAGAGAACCATGGCCGAGATCTC 662970 >seq7 Length=1042703 Score = 132 bits (146), Expect = 6e-26 Identities = 420/647 (65%), Gaps = 12/647 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || || | ||| || || || ||||| || |||||| || | ||| Sbjct 756868 TCAAAGTCCTCGCCGCCGAGGTGGGTGTCACCGGCGGTGGCGAGGACTTCGAACACACCG 756927 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | ||| || || ||||| || || || ||||| | | || | | Sbjct 756928 TCGTCGATCGAGAGGAGCGAGACGTCGAACGTGCCGCCGCCGAGGTCGTAGACGATGATG 756987 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | | |||| ||||| ||||||||||| || || ||||| || || Sbjct 756988 TTGCGCTCGCCGCC---GGTCTTGTCGAGTCCGTACGCGATCGCGGCGGCCGTCGGCTCG 757044 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | || || ||| || || || || || | || || || || || || || Sbjct 757045 TTGACGACGCGGAGGACGTTGAGACCCGCGATCGTGCCGGCGTCCTTGGTGGCCTGGCGC 757104 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||||||||| || ||||| |||| |||||| || | ||||| Sbjct 757105 TGGGCGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGCGTGACCTTGGTTCCGAGG 757164 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 |||| || || | || ||||| ||| || ||||| | || | ||| || | | Sbjct 757165 TACGTCTCGGCCGTCTCCTTCATCTTGCCGAGGACCATGGCCGAGACCTCCTCGGGGGTG 757224 Query 7817 AA---CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 || || || | || ||| | | || || |||| ||| | | || | ||| Sbjct 757225 AATGTCTTGCTCTTGTCGCCG---ACCTTGACCTCGATCACGGGCTGCTTCGTCGAGCCG 757281 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | | ||||| ||| | | |||| ||| ||||||| | ||| ||| Sbjct 757282 GCCTTGACCTTGAACGGGTAGTGCGTCATGTCGCGCTGGACCTCCTTGTCGTCAAAGCGG 757341 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | |||||| || ||||| || ||||| | ||||| | |||||| ||| |||||| Sbjct 757342 CGTCCGATCAGGCGCTTGGCGTCAAAGATCGTGTTGGTCGGGTTCGAGGCGTACTGGTTC 757401 Query 7994 TTCGCCGCGTCCCCGATAAGACGTT--CATTATTTTCCGTA-AACGCGACGTACGATGGG 8050 || || ||||| ||||| || || | | | | | || |||||||| || ||| Sbjct 757402 TTGGCGGCGTCGCCGATCAGGCGCTCGCCGGACGAGGGGGAGAAGGCGACGTAGGACGGG 757461 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 || | || || || |||||||| || || || || ||||| |||| Sbjct 757462 GTGATGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCGACCGTT 757508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132180745520