Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 seq3 111 3e-19 seq12 109 1e-18 seq6 91.5 3e-13 >seq2 Length=1846957 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || ||||| ||||| | |||||| | || || ||| Sbjct 970907 ACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCCTCG 970966 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || |||||||| ||||| || || || || || ||| Sbjct 970967 AGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGA 971026 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || ||||||||| || |||||||| || Sbjct 971027 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGA 971058 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| || || || || || ||||| || || || ||||| ||| || || | || Sbjct 971196 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 971255 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 || || |||||||| || |||||||| | || || ||||| ||||| || || || ||| Sbjct 971256 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 971315 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 || ||||| || ||||||||| || |||||||||||| || || || ||||| | Sbjct 971316 TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 971375 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || | || || ||||| | ||||| Sbjct 971376 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 971410 >seq3 Length=1525690 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | ||||| ||| Sbjct 1175415 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCG 1175356 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 1175355 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 1175296 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 1175295 ATCTTGGCCTTGAC 1175282 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | || || ||| Sbjct 1175855 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 1175796 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 1175795 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 1175736 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 1175735 ATCTTGGCCTTGAC 1175722 >seq12 Length=765624 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || || || ||||| || | || || | || || ||| Sbjct 75766 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 75707 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 75706 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 75647 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||||||| || || |||||||| || || || ||||| Sbjct 75646 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75597 >seq6 Length=1157922 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | |||||| | || || ||| Sbjct 265799 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 265858 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 265859 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 265918 Query 195052 ATTTT 195056 || || Sbjct 265919 ATCTT 265923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480491211826