Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq13 196 9e-45 seq3 89.7 1e-12 >seq13 Length=704413 Score = 196 bits (216), Expect = 9e-45 Identities = 542/819 (66%), Gaps = 23/819 (3%) Strand=Plus/Minus Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||||| || |||||||||||||| ||||| ||| ||||| | ||| ||| | || | Sbjct 568318 TTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACG 568259 Query 221879 TTGTCCCAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 || |||||| | ||||| || | || | |||| | |||||| ||| || || Sbjct 568258 GCGTACCAGAGCT-TCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTC---CTTCTCGTA 568203 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT-GG 221996 | | ||||| | |||| || ||||| |||||| || || || | ||| || Sbjct 568202 CTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGG-CGCCTCGG 568144 Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 | || || | || ||||| ||| | | ||| | || |||||||||||| |||| Sbjct 568143 CCGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGA 568084 Query 222057 TCCACAGCGCCTGAAAGAG-ATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCC 222113 |||| || || ||||| | || | ||| | ||||||| ||||| ||| || | Sbjct 568083 TCCAAAGGGC---AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGC 568027 Query 222114 TCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGC 222173 || || | ||||| || ||||| |||||||||||||| || |||| ||| | |||| Sbjct 568026 GGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGC 567967 Query 222174 CGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGG 222233 | || ||||||||||| ||||| || || | | || |||| | | ||| || Sbjct 567966 CCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCA 567907 Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293 | || | | ||||| || ||||| ||||| ||||||| |||| || | | Sbjct 567906 TGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGA 567847 Query 222294 GGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| | || | |||||| || || || || ||||| | ||||| |||||| Sbjct 567846 TGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGA 567787 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| ||||||||| || ||||| ||||| | | | || || || ||||| | Sbjct 567786 GCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGA 567727 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 ||| | | | | | |||||| || ||||| || ||||| |||||||| | | Sbjct 567726 GCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCT 567667 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGG 222533 ||||| || | ||||||||| | | | | | |||| ||| ||||| || | | Sbjct 567666 CCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCG 567607 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC-CCTTGGAGCTGGA----GAG 222588 || | |||| ||||| ||| || | ||| || | ||||| | | || ||| Sbjct 567606 CGACGCGCATGAGCATGTGCTGCGGTCGCTC----GGCCACCTTGCCG-TCGAGGCGGAG 567552 Query 222589 CAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 ||||||||| || || |||||||| || |||||||| Sbjct 567551 CAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAGTT 567513 >seq3 Length=1525690 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTT- 25872 ||||| ||| |||||| |||||| | | |||||| | | | || |||| ||| | Sbjct 1124224 GCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCT-CGGAC-GACCGCTCCGTCTT 1124167 Query 25873 -GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 |||||||| || || || || || || || ||||||||||| ||| ||| ||||| || Sbjct 1124166 CGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGC 1124107 Query 25932 GGCCATCTTCTGGCTCAAGCAG 25953 | ||||||||||||||||| || Sbjct 1124106 GTCCATCTTCTGGCTCAAGAAG 1124085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843894376320