Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq13 264 1e-65
seq2 141 9e-29
seq3 109 5e-19
seq12 102 8e-17
seq6 89.7 5e-13
>seq13
Length=704413
Score = 264 bits (292), Expect = 1e-65
Identities = 461/660 (70%), Gaps = 13/660 (2%)
Strand=Plus/Minus
Query 149033 GCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTC 149092
||||||||||| |||||| | | ||| || |||| | ||||||||| ||||
Sbjct 568220 GCGACCCTCCTTCTCGTACTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 568161
Query 149093 GAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTT 149152
||||||||| || | |||||| | ||| | ||| |||||| | | || ||||
Sbjct 568160 GAGACCGGGCGCCTCGGCCGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTC 568101
Query 149153 CATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC 149212
||| || || ||||| | ||| || || | | | ||||||||| | || ||
Sbjct 568100 CATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTT 568041
Query 149213 GCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTA 149272
||| ||| ||| |||| ||| | ||| ||||| |||||||||||||| | |||
Sbjct 568040 GCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTA 567981
Query 149273 CACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTT 149329
| |||| ||||||| ||||||| || ||||||||||||| |||| || |||||||
Sbjct 567980 GATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTT 567921
Query 149330 AAACACTCGAACCATAGGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CG 149386
|||| || | ||| || ||||| | | ||| |||||| || | ||| ||
Sbjct 567920 GTACACGCGGAGCATGGGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACG 567862
Query 149387 ACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGA 149445
| ||| ||| || | ||||| | || |||||||||||| ||||| ||| ||||
Sbjct 567861 AA--CCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGT-CTTGGAGA 567805
Query 149446 TGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTC 149504
|| |||||| ||| |||||| ||||||||||||||| |||| |||||| ||
Sbjct 567804 TGAGCGCGCACGTCTT-GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 567746
Query 149505 AGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTG 149564
| || |||||||| | | ||||| |||||||||| ||| | || ||
Sbjct 567745 ACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAC 567686
Query 149565 GCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCA 149624
||||| ||||| || || ||| | | ||||| ||||| | ||||||| |||||
Sbjct 567685 GCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCG 567626
Query 149625 TCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684
||||| |||||||| | ||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 567625 TCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 567566
Score = 187 bits (206), Expect = 2e-42
Identities = 372/549 (68%), Gaps = 8/549 (1%)
Strand=Plus/Minus
Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010
||||| || |||||||||||||||||||| || | |||| ||||| ||||| ||||
Sbjct 569453 GTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGAC 569394
Query 148011 GACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066
| ||||| || | ||||| || | | || | |||||| ||||||
Sbjct 569393 G---TGAGC-TGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTC 569338
Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126
||||||||||| ||||| ||||| | || |||| |||| | |||||||| |
Sbjct 569337 GATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACAC 569278
Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186
|||||||| | ||||||| | ||||| |||||| || | ||| | |||||||
Sbjct 569277 GGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTT 569218
Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246
|||||| | ||| || ||| |||| | | ||| | | |||| |||||
Sbjct 569217 GTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCG 569158
Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306
|| || | | || || ||||| |||||||||||||| ||||| || || | |||
Sbjct 569157 GAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTT 569098
Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366
| ||| |||| || |||| ||||||| ||| | ||||| ||||| || || ||
Sbjct 569097 GGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGG 569038
Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426
||| ||| || ||||||||||| | ||| | | || || ||||| |
Sbjct 569037 CATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTC 568978
Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486
||||||||||| || || ||| || |||||||||| |||||||||| | |||| |
Sbjct 568977 GGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTG 568918
Query 148487 GCTAGCGGG 148495
||| |||||
Sbjct 568917 GCTCGCGGG 568909
Score = 105 bits (116), Expect = 6e-18
Identities = 219/315 (70%), Gaps = 17/315 (5%)
Strand=Plus/Minus
Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCG-CGTT--A 120438
|| || |||||||||||||| || | | |||||| ||||||||||| |||| | || |
Sbjct 258701 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTT-CTCGGCATTGTA 258643
Query 120439 AAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498
|| | ||| | || | | || |||| ||||||||| || ||||| |||||||
Sbjct 258642 CAGCTTCTCG--TTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGT 258585
Query 120499 CACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCC 120558
| |||| |||||||||||| | ||| | || ||||| || ||| | || |||
Sbjct 258584 CGCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCC 258525
Query 120559 TTCTCAATGTCCACCGCCTCCTTGAACAT---GGCGAGCATAGTGTGGC-CGGGCATCTT 120614
| ||| || || || || || || || ||||| | ||| ||| | || ||
Sbjct 258524 TGCTCGATCTCGACGGCTTCGGCGATGATTTGGGCGA-CGCGGTGAGGCGCTGG--TC-G 258469
Query 120615 GTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCG 120674
| | |||| | ||| | || ||||| |||||||| ||||| ||||| ||||||||
Sbjct 258468 GCGCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCG 258412
Query 120675 CGATATCAGCTCGTT 120689
||| || ||||||||
Sbjct 258411 CGAGATGAGCTCGTT 258397
>seq2
Length=1846957
Score = 141 bits (156), Expect = 9e-29
Identities = 153/200 (77%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| | |||| ||| |||||| |||||||||||
Sbjct 971214 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACC-GTCCTCAAGCTGCTTGCC 971272
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || | |||||||||||||||||||| || |||||||| ||||| |||
Sbjct 971273 CGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTT 971332
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | ||| || |||| ||||| ||| |||||||| || ||
Sbjct 971333 GACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 971392
Query 133643 TTTTACGAAAATCTGCATGG 133662
|| ||||| ||||||||||
Sbjct 971393 CTTGACGAAGATCTGCATGG 971412
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||||||||| || |||||||| | |||| |||||| |||||||| |||
Sbjct 970487 GTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCC 970546
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | |||||||||||||||||||| || |||||||| |||||| ||||
Sbjct 970547 GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 970606
Query 133584 AGCTG 133588
| |||
Sbjct 970607 ACCTG 970611
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/163 (74%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| ||||| ||||| | | | | |||| |||||||||||||||
Sbjct 970918 GGTCGACTCTTTCTGGATATTATAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 970975
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || | ||||| |||||||||||||| || ||||| || ||||| |
Sbjct 970976 CCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGCC 971035
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|||| | || | ||||||| | ||| || |||| ||||
Sbjct 971036 TTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGA 971078
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 133484 GTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTG 133543
||| |||| || |||| | ||||||||||||||| || ||| | || | |||||||
Sbjct 1252244 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 1252185
Query 133544 GTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGT 133603
|||||| |||||||| |||||||| |||||| ||||| | | |||||||| |
Sbjct 1252184 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTCGTAGACCGTGTCAGA 1252125
Query 133604 GGGCTCCACGTCGA 133617
|||| || ||||
Sbjct 1252124 CAGCTCAACCTCGA 1252111
>seq3
Length=1525690
Score = 109 bits (120), Expect = 5e-19
Identities = 102/128 (80%), Gaps = 4/128 (3%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| |||||||||||||||
Sbjct 1175844 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 1175787
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || || |||||||||||||||||||| || |||||||| |||||| |
Sbjct 1175786 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1175727
Query 133581 TTGAGCTG 133588
|||| |||
Sbjct 1175726 TTGACCTG 1175719
Score = 104 bits (114), Expect = 2e-17
Identities = 101/128 (79%), Gaps = 4/128 (3%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||
Sbjct 1175404 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 1175347
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || || |||||||||||||||||||| || |||||||| |||||| |
Sbjct 1175346 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1175287
Query 133581 TTGAGCTG 133588
|||| |||
Sbjct 1175286 TTGACCTG 1175279
Score = 98.7 bits (108), Expect = 1e-15
Identities = 215/313 (69%), Gaps = 13/313 (4%)
Strand=Plus/Plus
Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTTAAAG 120441
|| || |||||||||||||| || | | ||| || |||||||||| || | || |
Sbjct 1123653 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGT---TCTCCTTGTGG 1123709
Query 120442 TATTTCGGCTGG--CCCAACTG-TACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498
|| || || | |||| || || |||| ||||| || |||||||| ||||||| |
Sbjct 1123710 TAGATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGG 1123769
Query 120499 CACATGGACTGCGC-GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTC 120557
||||| || ||| ||||||||| | | | || |||| |||| ||||| |||||
Sbjct 1123770 CACAT-GAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTC 1123828
Query 120558 CTTCTCAATGTCCACCGCCTCCTTGAACATG-GCGAGCATAGTGTGGCCGGGCATCTTGT 120616
| ||| || || |||||||| || ||| || | | |||| | | | |
Sbjct 1123829 TTGCTCGATCTCGACCGCCTCGCGGATGATGCGCTCG-ACCGTGTCGGGGTGAGGGCGGC 1123887
Query 120617 GTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCG 120676
| |||| | ||| | || ||||| |||||||| ||||| || || ||||||||||
Sbjct 1123888 GCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGCG 1123944
Query 120677 ATATCAGCTCGTT 120689
| || ||||||||
Sbjct 1123945 AGATGAGCTCGTT 1123957
>seq12
Length=765624
Score = 102 bits (112), Expect = 8e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 75755 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 75696
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| ||||||||||| || |||||||| |||||||| |||||| |||
Sbjct 75695 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 75636
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||| | | ||| || |||| |||||
Sbjct 75635 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 75595
>seq6
Length=1157922
Score = 89.7 bits (98), Expect = 5e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 265810 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 265869
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| | || || |||||||||||||| |||||||| |||||||| ||||||
Sbjct 265870 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 265923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420328664720
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