Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13 264 1e-65 seq2 141 9e-29 seq3 109 5e-19 seq12 102 8e-17 seq6 89.7 5e-13 >seq13 Length=704413 Score = 264 bits (292), Expect = 1e-65 Identities = 461/660 (70%), Gaps = 13/660 (2%) Strand=Plus/Minus Query 149033 GCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTC 149092 ||||||||||| |||||| | | ||| || |||| | ||||||||| |||| Sbjct 568220 GCGACCCTCCTTCTCGTACTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 568161 Query 149093 GAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTT 149152 ||||||||| || | |||||| | ||| | ||| |||||| | | || |||| Sbjct 568160 GAGACCGGGCGCCTCGGCCGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTC 568101 Query 149153 CATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC 149212 ||| || || ||||| | ||| || || | | | ||||||||| | || || Sbjct 568100 CATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTT 568041 Query 149213 GCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTA 149272 ||| ||| ||| |||| ||| | ||| ||||| |||||||||||||| | ||| Sbjct 568040 GCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTA 567981 Query 149273 CACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTT 149329 | |||| ||||||| ||||||| || ||||||||||||| |||| || ||||||| Sbjct 567980 GATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTT 567921 Query 149330 AAACACTCGAACCATAGGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CG 149386 |||| || | ||| || ||||| | | ||| |||||| || | ||| || Sbjct 567920 GTACACGCGGAGCATGGGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACG 567862 Query 149387 ACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGA 149445 | ||| ||| || | ||||| | || |||||||||||| ||||| ||| |||| Sbjct 567861 AA--CCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGT-CTTGGAGA 567805 Query 149446 TGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTC 149504 || |||||| ||| |||||| ||||||||||||||| |||| |||||| || Sbjct 567804 TGAGCGCGCACGTCTT-GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 567746 Query 149505 AGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTG 149564 | || |||||||| | | ||||| |||||||||| ||| | || || Sbjct 567745 ACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAC 567686 Query 149565 GCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCA 149624 ||||| ||||| || || ||| | | ||||| ||||| | ||||||| ||||| Sbjct 567685 GCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCG 567626 Query 149625 TCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||| |||||||| | ||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 567625 TCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 567566 Score = 187 bits (206), Expect = 2e-42 Identities = 372/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 ||||| || |||||||||||||||||||| || | |||| ||||| ||||| |||| Sbjct 569453 GTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGAC 569394 Query 148011 GACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066 | ||||| || | ||||| || | | || | |||||| |||||| Sbjct 569393 G---TGAGC-TGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTC 569338 Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126 ||||||||||| ||||| ||||| | || |||| |||| | |||||||| | Sbjct 569337 GATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACAC 569278 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 |||||||| | ||||||| | ||||| |||||| || | ||| | ||||||| Sbjct 569277 GGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTT 569218 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 |||||| | ||| || ||| |||| | | ||| | | |||| ||||| Sbjct 569217 GTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCG 569158 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306 || || | | || || ||||| |||||||||||||| ||||| || || | ||| Sbjct 569157 GAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTT 569098 Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366 | ||| |||| || |||| ||||||| ||| | ||||| ||||| || || || Sbjct 569097 GGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGG 569038 Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426 ||| ||| || ||||||||||| | ||| | | || || ||||| | Sbjct 569037 CATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTC 568978 Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 ||||||||||| || || ||| || |||||||||| |||||||||| | |||| | Sbjct 568977 GGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTG 568918 Query 148487 GCTAGCGGG 148495 ||| ||||| Sbjct 568917 GCTCGCGGG 568909 Score = 105 bits (116), Expect = 6e-18 Identities = 219/315 (70%), Gaps = 17/315 (5%) Strand=Plus/Minus Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCG-CGTT--A 120438 || || |||||||||||||| || | | |||||| ||||||||||| |||| | || | Sbjct 258701 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTT-CTCGGCATTGTA 258643 Query 120439 AAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498 || | ||| | || | | || |||| ||||||||| || ||||| ||||||| Sbjct 258642 CAGCTTCTCG--TTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGT 258585 Query 120499 CACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCC 120558 | |||| |||||||||||| | ||| | || ||||| || ||| | || ||| Sbjct 258584 CGCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCC 258525 Query 120559 TTCTCAATGTCCACCGCCTCCTTGAACAT---GGCGAGCATAGTGTGGC-CGGGCATCTT 120614 | ||| || || || || || || || ||||| | ||| ||| | || || Sbjct 258524 TGCTCGATCTCGACGGCTTCGGCGATGATTTGGGCGA-CGCGGTGAGGCGCTGG--TC-G 258469 Query 120615 GTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCG 120674 | | |||| | ||| | || ||||| |||||||| ||||| ||||| |||||||| Sbjct 258468 GCGCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCG 258412 Query 120675 CGATATCAGCTCGTT 120689 ||| || |||||||| Sbjct 258411 CGAGATGAGCTCGTT 258397 >seq2 Length=1846957 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| | |||| ||| |||||| ||||||||||| Sbjct 971214 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACC-GTCCTCAAGCTGCTTGCC 971272 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||||||||| || |||||||| ||||| ||| Sbjct 971273 CGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTT 971332 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || |||| ||||| ||| |||||||| || || Sbjct 971333 GACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 971392 Query 133643 TTTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 971393 CTTGACGAAGATCTGCATGG 971412 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || |||||||| | |||| |||||| |||||||| ||| Sbjct 970487 GTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCC 970546 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | |||||||||||||||||||| || |||||||| |||||| |||| Sbjct 970547 GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 970606 Query 133584 AGCTG 133588 | ||| Sbjct 970607 ACCTG 970611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| ||||| ||||| | | | | |||| ||||||||||||||| Sbjct 970918 GGTCGACTCTTTCTGGATATTATAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 970975 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || | ||||| |||||||||||||| || ||||| || ||||| | Sbjct 970976 CCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGCC 971035 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 |||| | || | ||||||| | ||| || |||| |||| Sbjct 971036 TTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGA 971078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 133484 GTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTG 133543 ||| |||| || |||| | ||||||||||||||| || ||| | || | ||||||| Sbjct 1252244 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 1252185 Query 133544 GTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGT 133603 |||||| |||||||| |||||||| |||||| ||||| | | |||||||| | Sbjct 1252184 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTCGTAGACCGTGTCAGA 1252125 Query 133604 GGGCTCCACGTCGA 133617 |||| || |||| Sbjct 1252124 CAGCTCAACCTCGA 1252111 >seq3 Length=1525690 Score = 109 bits (120), Expect = 5e-19 Identities = 102/128 (80%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 1175844 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 1175787 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || || |||||||||||||||||||| || |||||||| |||||| | Sbjct 1175786 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1175727 Query 133581 TTGAGCTG 133588 |||| ||| Sbjct 1175726 TTGACCTG 1175719 Score = 104 bits (114), Expect = 2e-17 Identities = 101/128 (79%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| |||||||||||||| Sbjct 1175404 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 1175347 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || || |||||||||||||||||||| || |||||||| |||||| | Sbjct 1175346 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1175287 Query 133581 TTGAGCTG 133588 |||| ||| Sbjct 1175286 TTGACCTG 1175279 Score = 98.7 bits (108), Expect = 1e-15 Identities = 215/313 (69%), Gaps = 13/313 (4%) Strand=Plus/Plus Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTTAAAG 120441 || || |||||||||||||| || | | ||| || |||||||||| || | || | Sbjct 1123653 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGT---TCTCCTTGTGG 1123709 Query 120442 TATTTCGGCTGG--CCCAACTG-TACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498 || || || | |||| || || |||| ||||| || |||||||| ||||||| | Sbjct 1123710 TAGATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGG 1123769 Query 120499 CACATGGACTGCGC-GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTC 120557 ||||| || ||| ||||||||| | | | || |||| |||| ||||| ||||| Sbjct 1123770 CACAT-GAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTC 1123828 Query 120558 CTTCTCAATGTCCACCGCCTCCTTGAACATG-GCGAGCATAGTGTGGCCGGGCATCTTGT 120616 | ||| || || |||||||| || ||| || | | |||| | | | | Sbjct 1123829 TTGCTCGATCTCGACCGCCTCGCGGATGATGCGCTCG-ACCGTGTCGGGGTGAGGGCGGC 1123887 Query 120617 GTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCG 120676 | |||| | ||| | || ||||| |||||||| ||||| || || |||||||||| Sbjct 1123888 GCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGCG 1123944 Query 120677 ATATCAGCTCGTT 120689 | || |||||||| Sbjct 1123945 AGATGAGCTCGTT 1123957 >seq12 Length=765624 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 75755 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 75696 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 75695 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 75636 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || |||| ||||| Sbjct 75635 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 75595 >seq6 Length=1157922 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 265810 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 265869 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | || || |||||||||||||| |||||||| |||||||| |||||| Sbjct 265870 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 265923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420328664720