Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq13 233 3e-55
seq3 163 4e-34
seq24 138 2e-26
seq23 102 1e-15
>seq13
Length=704413
Score = 233 bits (258), Expect = 3e-55
Identities = 225/289 (78%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
||||||| ||| || || || ||| |||| |||||||| || |||||||||||||
Sbjct 567659 CATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACGCCGCA 567718
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
||||||| ||||||||||| || | ||||||| ||| |||||||||||||||||
Sbjct 567719 CCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGGCATCTA 567778
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
|||||||||||| ||||||||||||||||||| |||| ||||||||||| | |
Sbjct 567779 CGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCTCTCGAT 567838
Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133
||||| | ||||| | || | ||| | || ||||| |||||| | || |||||| |
Sbjct 567839 CCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAACGGCAT 567898
Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
| |||||||| ||||| | ||| |||||||||||||||||||||||
Sbjct 567899 CATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAG 567947
Score = 154 bits (170), Expect = 2e-31
Identities = 370/548 (68%), Gaps = 30/548 (5%)
Strand=Plus/Plus
Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938
|||||||||| || || || | | || ||||| ||| | ||||||||| |||
Sbjct 568966 TGGGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCG---CTC 569022
Query 262939 GTG---GCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995
||| |||| ||||| || ||| |||| |||||||| ||| || ||||||||||
Sbjct 569023 GTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTC 569082
Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055
||| |||| |||||||||||| |||||||| ||| | ||||| || || |||
Sbjct 569083 GAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTCCAGGTCGTC 569142
Query 263056 AACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGA-CGCC-CGACTTTCGC 263112
|||| | || || ||| | | || | ||||||||||||| || | ||| |
Sbjct 569143 AACCCCTGGCTCCTCC-GCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGA--TGAAG 569199
Query 263113 GACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171
|| | |||| ||| |||| |||||| | ||| | | || | | ||
Sbjct 569200 AACACGATCATCGCG-CACAACGGCTCGATCCAGAACGTCCCCGGCA------TCCCCGA 569252
Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231
||| |||||| ||| |||||||||||||||| | | | ||| ||| || |
Sbjct 569253 CGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGACCT 569312
Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC----- 263286
|| |||||||||| | | |||||||| |||||||||||| | |||||
Sbjct 569313 CGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTC 569372
Query 263287 GCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346
||||||| | ||| || |||||||||||||| ||| | ||| || |||
Sbjct 569373 GCCGACC--ATGGCGCAGC---TCACGTCGATGCACTTCTACGGATGGAAGAAAGGTCTC 569427
Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406
||||| ||||||||||| || |||||||| | || | | |||||| | |||||||||
Sbjct 569428 AAGACGGGCATGTACTACCTCCGCACCCGCGCTGCCGTCGGCGCCATCAAGTTCACCGTC 569487
Query 263407 GATCAGGC 263414
|| |||||
Sbjct 569488 GACCAGGC 569495
Score = 125 bits (138), Expect = 1e-22
Identities = 256/383 (67%), Gaps = 16/383 (4%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| |||||| || ||| |||||| || ||||||||||||||| ||
Sbjct 567948 GGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATC 568007
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| | | || |||||| ||||||||||||| ||| |||| || ||||||||
Sbjct 568008 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCGCGC 568061
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965
|| | || | | ||| |||| |||||| || || | || || || | | |
Sbjct 568062 GACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 568119
Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025
|||||||| | ||||| |||||| ||||||||||||| || ||||| ||| |||| |
Sbjct 568120 GCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACG 568179
Query 262026 CCTTTGACGCCCTCTATG---AGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGC 262082
|| | | |||| || || ||| ||| || |
Sbjct 568180 AGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATC---C 568236
Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142
|||| | || |||||| ||| | ||| |||||| ||||||| |||| |||| ||
Sbjct 568237 CCGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 568296
Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165
|| |||||||||| |||| ||||
Sbjct 568297 TGCTCTACAAGGATGCCGCCAAC 568319
Score = 118 bits (130), Expect = 2e-20
Identities = 199/278 (72%), Gaps = 15/278 (5%)
Strand=Plus/Plus
Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGT----CAACAAGC-CGTCGACCGACGT-G 1456513
||||||||||| || |||| | || |||| | || ||| | || |||| ||| |
Sbjct 258433 GACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCCGACCAGCGCCTC-ACCG-CGTCG 258490
Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573
||||| ||||||| ||| ||||||||||||||| | || || | | || | ||
Sbjct 258491 CCCAA----ATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTG 258546
Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633
|| || | | |||||||||||||| ||| |||||| | |||||||| | | || ||||
Sbjct 258547 CCCGTCGGCTTGATCGGCATGAACGCGACC-CTCATGCGACAGTACATCG-AGTTCGTCG 258604
Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693
| ||||| |||| | ||||| || | ||||||| ||| | | |||||||||
Sbjct 258605 CGGACCGATTGCTTGTCGCGCTTGGGAAC-GAGAAGCTGTACAATGCCGAGAACCCGTTC 258663
Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731
| |||||| |||||||| | ||||||||||||||
Sbjct 258664 GACTTTATGGAGATGATCTCGATGGAGGGCAAGACCAA 258701
>seq3
Length=1525690
Score = 163 bits (180), Expect = 4e-34
Identities = 213/287 (74%), Gaps = 7/287 (2%)
Strand=Plus/Minus
Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506
|||| | ||| ||||||||||| || |||| | || |||| | ||| || |
Sbjct 1123934 AGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCC-GCCCTCACC 1123876
Query 1456507 C-GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565
| ||| | | ||| |||||| |||||| |||||||||||| ||||||| ||| |
Sbjct 1123875 CCGACACGGTCGAGCGCATCATCCGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGG 1123816
Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGA 1456624
|| ||||||| || |||||||||||||||| || || ||||||||||||||||| |
Sbjct 1123815 AGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG- 1123759
Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684
| ||||| ||||||||| |||| | || || ||| | |||||| ||||| | ||
Sbjct 1123758 AGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAAC-GAGAAGATCTACCACAAGGAG 1123700
Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731
||||||||| | |||||| |||||||| | ||||||||||||||
Sbjct 1123699 AACCCGTTCGACTTCATGGAGATGATCTCGATGGAGGGCAAGACCAA 1123653
Score = 105 bits (116), Expect = 1e-16
Identities = 120/156 (77%), Gaps = 5/156 (3%)
Strand=Plus/Minus
Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181
||| |||||||| |||||| | | |||||| | || || || | || | ||||
Sbjct 1124217 GAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGACGACCGCTCCGTC--TTCGGCGAG 1124160
Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239
|| ||||||| || ||||| |||||||||||||| ||||| ||| ||| ||| ||||
Sbjct 1124159 CGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCAT 1124101
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||||||| | |||||||| ||
Sbjct 1124100 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 1124065
Score = 91.5 bits (100), Expect = 2e-12
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935
|||| || || || || || || | | |||||| | | | |||| |||||| |||
Sbjct 947237 CGCAAAATCGCGCACCGACTTTGAATCGGCTCGATAATCTTGTTCGACTGGTTGCAAGCC 947296
Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995
|| || ||||||||||| ||| | | ||||| || |||||||| ||||| ||
Sbjct 947297 AGCGCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGGAGGGCTTGTTGTGCG 947356
Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCA 333053
| | ||| | ||||||| |||||||||||||||| ||||||||| || | ||||
Sbjct 947357 CCAGTCGTCATCGAGTCGGCTTCGTCGAGGATGATGAGCTTGTGGCGGCCAAGAGGCA 947414
>seq24
Length=139862
Score = 138 bits (152), Expect = 2e-26
Identities = 250/359 (70%), Gaps = 15/359 (4%)
Strand=Plus/Minus
Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190
||||||||| ||||||||||| || ||| || | | || ||| |||||||||||
Sbjct 79377 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAATCCTCCTGGTT 79318
Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247
|||| | || || || |||||| ||| || ||||| || |||| || || ||
Sbjct 79317 GTAGCCGGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 79259
Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304
| || || |||||| | | ||| | | || ||| ||||||||| | |||
Sbjct 79258 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 79201
Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361
|| | || |||||| ||| | |||| | | |||| | || | | | || |||
Sbjct 79200 GTTGGCCATCGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACACC--CATAGC-CTG 79144
Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421
|||||||||||| | ||||||| |||||||||| | ||||||||||| || || |||||
Sbjct 79143 CTTGCCCATGGCAGACTGGTAGGTGTTGCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 79084
Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480
||||||||||||| ||| || || | ||||||| |||| |||||| ||| ||
Sbjct 79083 GATGGACGCGCAGATGCCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 79025
>seq23
Length=160940
Score = 102 bits (112), Expect = 1e-15
Identities = 192/281 (68%), Gaps = 1/281 (0%)
Strand=Plus/Minus
Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556
|| |||| ||||||||||||||||||||| | | || | || ||| | |||
Sbjct 57480 CCCATGACGGGCTTGTTGGCCTGCGGCGAGATAATGTTTCGCGCGACGGCGGCGATGTTG 57421
Query 1817557 GTCACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615
||| ||| | || | || || ||||| || || || | |||||||||||||||||||
Sbjct 57420 ATCAGCTCCGACCGAGTCTCCTCTGACTGCGGGACGTGCAAGTTCATCTCGTCGCCGTCA 57361
Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675
|||||||| ||||| | ||||| | ||||||| || | ||| | ||||||
Sbjct 57360 AAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGGTCGAGTACGGCATG 57301
Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735
|| || |||| | ||| || | |||| | || ||||||||||| | ||
Sbjct 57300 AGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACGGCTGCCGGTTGAACAGG 57241
Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776
||| ||||||| | ||||| |||||||| |||| ||
Sbjct 57240 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACAATCCAGCC 57200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177803676756636
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