Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13 233 3e-55 seq3 163 4e-34 seq24 138 2e-26 seq23 102 1e-15 >seq13 Length=704413 Score = 233 bits (258), Expect = 3e-55 Identities = 225/289 (78%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| ||| || || || ||| |||| |||||||| || ||||||||||||| Sbjct 567659 CATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACGCCGCA 567718 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||||| ||||||||||| || | ||||||| ||| ||||||||||||||||| Sbjct 567719 CCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGGCATCTA 567778 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||||||| ||||||||||||||||||| |||| ||||||||||| | | Sbjct 567779 CGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCTCTCGAT 567838 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | || | ||| | || ||||| |||||| | || |||||| | Sbjct 567839 CCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAACGGCAT 567898 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | |||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct 567899 CATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAG 567947 Score = 154 bits (170), Expect = 2e-31 Identities = 370/548 (68%), Gaps = 30/548 (5%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||| || || || | | || ||||| ||| | ||||||||| ||| Sbjct 568966 TGGGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCG---CTC 569022 Query 262939 GTG---GCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995 ||| |||| ||||| || ||| |||| |||||||| ||| || |||||||||| Sbjct 569023 GTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTC 569082 Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055 ||| |||| |||||||||||| |||||||| ||| | ||||| || || ||| Sbjct 569083 GAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTCCAGGTCGTC 569142 Query 263056 AACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGA-CGCC-CGACTTTCGC 263112 |||| | || || ||| | | || | ||||||||||||| || | ||| | Sbjct 569143 AACCCCTGGCTCCTCC-GCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGA--TGAAG 569199 Query 263113 GACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171 || | |||| ||| |||| |||||| | ||| | | || | | || Sbjct 569200 AACACGATCATCGCG-CACAACGGCTCGATCCAGAACGTCCCCGGCA------TCCCCGA 569252 Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231 ||| |||||| ||| |||||||||||||||| | | | ||| ||| || | Sbjct 569253 CGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGACCT 569312 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC----- 263286 || |||||||||| | | |||||||| |||||||||||| | ||||| Sbjct 569313 CGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTC 569372 Query 263287 GCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346 ||||||| | ||| || |||||||||||||| ||| | ||| || ||| Sbjct 569373 GCCGACC--ATGGCGCAGC---TCACGTCGATGCACTTCTACGGATGGAAGAAAGGTCTC 569427 Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 ||||| ||||||||||| || |||||||| | || | | |||||| | ||||||||| Sbjct 569428 AAGACGGGCATGTACTACCTCCGCACCCGCGCTGCCGTCGGCGCCATCAAGTTCACCGTC 569487 Query 263407 GATCAGGC 263414 || ||||| Sbjct 569488 GACCAGGC 569495 Score = 125 bits (138), Expect = 1e-22 Identities = 256/383 (67%), Gaps = 16/383 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| |||||| || ||| |||||| || ||||||||||||||| || Sbjct 567948 GGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATC 568007 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || |||||| ||||||||||||| ||| |||| || |||||||| Sbjct 568008 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCGCGC 568061 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965 || | || | | ||| |||| |||||| || || | || || || | | | Sbjct 568062 GACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 568119 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 |||||||| | ||||| |||||| ||||||||||||| || ||||| ||| |||| | Sbjct 568120 GCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACG 568179 Query 262026 CCTTTGACGCCCTCTATG---AGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGC 262082 || | | |||| || || ||| ||| || | Sbjct 568180 AGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATC---C 568236 Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142 |||| | || |||||| ||| | ||| |||||| ||||||| |||| |||| || Sbjct 568237 CCGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 568296 Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165 || |||||||||| |||| |||| Sbjct 568297 TGCTCTACAAGGATGCCGCCAAC 568319 Score = 118 bits (130), Expect = 2e-20 Identities = 199/278 (72%), Gaps = 15/278 (5%) Strand=Plus/Plus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGT----CAACAAGC-CGTCGACCGACGT-G 1456513 ||||||||||| || |||| | || |||| | || ||| | || |||| ||| | Sbjct 258433 GACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCCGACCAGCGCCTC-ACCG-CGTCG 258490 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 ||||| ||||||| ||| ||||||||||||||| | || || | | || | || Sbjct 258491 CCCAA----ATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTG 258546 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 || || | | |||||||||||||| ||| |||||| | |||||||| | | || |||| Sbjct 258547 CCCGTCGGCTTGATCGGCATGAACGCGACC-CTCATGCGACAGTACATCG-AGTTCGTCG 258604 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 | ||||| |||| | ||||| || | ||||||| ||| | | ||||||||| Sbjct 258605 CGGACCGATTGCTTGTCGCGCTTGGGAAC-GAGAAGCTGTACAATGCCGAGAACCCGTTC 258663 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 | |||||| |||||||| | |||||||||||||| Sbjct 258664 GACTTTATGGAGATGATCTCGATGGAGGGCAAGACCAA 258701 >seq3 Length=1525690 Score = 163 bits (180), Expect = 4e-34 Identities = 213/287 (74%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||| ||||||||||| || |||| | || |||| | ||| || | Sbjct 1123934 AGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCC-GCCCTCACC 1123876 Query 1456507 C-GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | ||| | | ||| |||||| |||||| |||||||||||| ||||||| ||| | Sbjct 1123875 CCGACACGGTCGAGCGCATCATCCGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGG 1123816 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGA 1456624 || ||||||| || |||||||||||||||| || || ||||||||||||||||| | Sbjct 1123815 AGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG- 1123759 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 | ||||| ||||||||| |||| | || || ||| | |||||| ||||| | || Sbjct 1123758 AGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAAC-GAGAAGATCTACCACAAGGAG 1123700 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 ||||||||| | |||||| |||||||| | |||||||||||||| Sbjct 1123699 AACCCGTTCGACTTCATGGAGATGATCTCGATGGAGGGCAAGACCAA 1123653 Score = 105 bits (116), Expect = 1e-16 Identities = 120/156 (77%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||| |||||||| |||||| | | |||||| | || || || | || | |||| Sbjct 1124217 GAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGACGACCGCTCCGTC--TTCGGCGAG 1124160 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || ||||||| || ||||| |||||||||||||| ||||| ||| ||| ||| |||| Sbjct 1124159 CGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCAT 1124101 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||| | |||||||| || Sbjct 1124100 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 1124065 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 |||| || || || || || || | | |||||| | | | |||| |||||| ||| Sbjct 947237 CGCAAAATCGCGCACCGACTTTGAATCGGCTCGATAATCTTGTTCGACTGGTTGCAAGCC 947296 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 || || ||||||||||| ||| | | ||||| || |||||||| ||||| || Sbjct 947297 AGCGCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGGAGGGCTTGTTGTGCG 947356 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCA 333053 | | ||| | ||||||| |||||||||||||||| ||||||||| || | |||| Sbjct 947357 CCAGTCGTCATCGAGTCGGCTTCGTCGAGGATGATGAGCTTGTGGCGGCCAAGAGGCA 947414 >seq24 Length=139862 Score = 138 bits (152), Expect = 2e-26 Identities = 250/359 (70%), Gaps = 15/359 (4%) Strand=Plus/Minus Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190 ||||||||| ||||||||||| || ||| || | | || ||| ||||||||||| Sbjct 79377 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAATCCTCCTGGTT 79318 Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247 |||| | || || || |||||| ||| || ||||| || |||| || || || Sbjct 79317 GTAGCCGGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 79259 Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304 | || || |||||| | | ||| | | || ||| ||||||||| | ||| Sbjct 79258 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 79201 Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361 || | || |||||| ||| | |||| | | |||| | || | | | || ||| Sbjct 79200 GTTGGCCATCGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACACC--CATAGC-CTG 79144 Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421 |||||||||||| | ||||||| |||||||||| | ||||||||||| || || ||||| Sbjct 79143 CTTGCCCATGGCAGACTGGTAGGTGTTGCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 79084 Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480 ||||||||||||| ||| || || | ||||||| |||| |||||| ||| || Sbjct 79083 GATGGACGCGCAGATGCCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 79025 >seq23 Length=160940 Score = 102 bits (112), Expect = 1e-15 Identities = 192/281 (68%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556 || |||| ||||||||||||||||||||| | | || | || ||| | ||| Sbjct 57480 CCCATGACGGGCTTGTTGGCCTGCGGCGAGATAATGTTTCGCGCGACGGCGGCGATGTTG 57421 Query 1817557 GTCACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615 ||| ||| | || | || || ||||| || || || | ||||||||||||||||||| Sbjct 57420 ATCAGCTCCGACCGAGTCTCCTCTGACTGCGGGACGTGCAAGTTCATCTCGTCGCCGTCA 57361 Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675 |||||||| ||||| | ||||| | ||||||| || | ||| | |||||| Sbjct 57360 AAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGGTCGAGTACGGCATG 57301 Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735 || || |||| | ||| || | |||| | || ||||||||||| | || Sbjct 57300 AGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACGGCTGCCGGTTGAACAGG 57241 Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 ||| ||||||| | ||||| |||||||| |||| || Sbjct 57240 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACAATCCAGCC 57200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177803676756636