Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq13 183 4e-41
seq1 89.7 6e-13
seq21 87.8 2e-12
>seq13
Length=704413
Score = 183 bits (202), Expect = 4e-41
Identities = 488/736 (66%), Gaps = 11/736 (1%)
Strand=Plus/Minus
Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889
||||||||||| |||||| | || | |||||||| |||| || ||| | || | |
Sbjct 568312 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 568253
Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
|||| | || | || || | ||| ||||| || ||||| | |||||||||| |
Sbjct 568252 CAGAGCTTCTGG-GCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 568194
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
||| | | ||||| || || | |||| ||| || || |||| | ||||||||
Sbjct 568193 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 568134
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | || || ||| || |||| |||||||||||| |||||||| || ||
Sbjct 568133 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 568074
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 568073 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 568014
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186
|| | ||| || ||||||||||| || ||||| | |||| | ||| ||
Sbjct 568013 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 567954
Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245
|| |||||| || || | ||| ||| ||| | || || ||||| || ||||| ||
Sbjct 567953 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 567894
Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303
| || | ||| || || || ||| ||||| | | || | || | ||||||
Sbjct 567893 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGG--TCGCGCGGATGTTGTGGATC 567836
Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363
| || || || |||||| ||| ||||| |||||||| | |||| || |||||
Sbjct 567835 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 567776
Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423
|| || ||||||||||| |||| | | || ||||||||| ||| | || ||
Sbjct 567775 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 567716
Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482
|| || || ||||||||||| || || | |||||| | || |||| | |||||
Sbjct 567715 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 567657
Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542
|| ||| ||||| | || | |||||| || ||||| || |||| || ||| |||||
Sbjct 567656 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 567597
Query 119543 AAACATGTATTGGGGT 119558
| ||||| || |||
Sbjct 567596 GAGCATGTGCTGCGGT 567581
>seq1
Length=1973210
Score = 89.7 bits (98), Expect = 6e-13
Identities = 187/276 (68%), Gaps = 2/276 (1%)
Strand=Plus/Minus
Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAA 14291
||| |||| |||||||| || |||||||| | ||| || || || ||| || |
Sbjct 1712598 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 1712539
Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351
| ||| | || || || | ||||||||||||| || |||||||| || || | ||
Sbjct 1712538 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 1712480
Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411
| |||| || |||||||||| | ||| || ||| | ||| ||||||||| |
Sbjct 1712479 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 1712420
Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGC 14471
|||| || || || || || | ||| | ||| || || |||||| ||||||| ||
Sbjct 1712419 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACCGAGGC 1712360
Query 14472 CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507
|||| |||| || | || ||||| | ||||
Sbjct 1712359 GCTCGTAGTGTTCGGGGTTCTTGAGGAACTTGACGA 1712324
>seq21
Length=241866
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131
|| |||||| |||| || | ||||||||||| || ||||| || || | |||||||
Sbjct 75446 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGTGACTACGTCGAGGGCATGTGG 75505
Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191
| | | || || || || || | ||||| | |||| ||||||| || ||||| ||| ||
Sbjct 75506 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 75565
Query 12192 GTCAGGGAGTTCGTTGAG 12209
||| | ||||| || |||
Sbjct 75566 GTCCGCGAGTTTGTCGAG 75583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434597025680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |