Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13 183 4e-41 seq1 89.7 6e-13 seq21 87.8 2e-12 >seq13 Length=704413 Score = 183 bits (202), Expect = 4e-41 Identities = 488/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Minus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||||| |||||| | || | |||||||| |||| || ||| | || | | Sbjct 568312 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 568253 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 |||| | || | || || | ||| ||||| || ||||| | |||||||||| | Sbjct 568252 CAGAGCTTCTGG-GCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 568194 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| | | ||||| || || | |||| ||| || || |||| | |||||||| Sbjct 568193 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 568134 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | || || ||| || |||| |||||||||||| |||||||| || || Sbjct 568133 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 568074 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| | || || ||| | || || | || || || || | || | || Sbjct 568073 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 568014 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186 || | ||| || ||||||||||| || ||||| | |||| | ||| || Sbjct 568013 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 567954 Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 || |||||| || || | ||| ||| ||| | || || ||||| || ||||| || Sbjct 567953 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 567894 Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || | ||| || || || ||| ||||| | | || | || | |||||| Sbjct 567893 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGG--TCGCGCGGATGTTGTGGATC 567836 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | || || || |||||| ||| ||||| |||||||| | |||| || ||||| Sbjct 567835 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 567776 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || ||||||||||| |||| | | || ||||||||| ||| | || || Sbjct 567775 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 567716 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 567715 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 567657 Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 || ||| ||||| | || | |||||| || ||||| || |||| || ||| ||||| Sbjct 567656 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 567597 Query 119543 AAACATGTATTGGGGT 119558 | ||||| || ||| Sbjct 567596 GAGCATGTGCTGCGGT 567581 >seq1 Length=1973210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAA 14291 ||| |||| |||||||| || |||||||| | ||| || || || ||| || | Sbjct 1712598 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 1712539 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | ||| | || || || | ||||||||||||| || |||||||| || || | || Sbjct 1712538 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 1712480 Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | |||| || |||||||||| | ||| || ||| | ||| ||||||||| | Sbjct 1712479 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 1712420 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGC 14471 |||| || || || || || | ||| | ||| || || |||||| ||||||| || Sbjct 1712419 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACCGAGGC 1712360 Query 14472 CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507 |||| |||| || | || ||||| | |||| Sbjct 1712359 GCTCGTAGTGTTCGGGGTTCTTGAGGAACTTGACGA 1712324 >seq21 Length=241866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131 || |||||| |||| || | ||||||||||| || ||||| || || | ||||||| Sbjct 75446 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGTGACTACGTCGAGGGCATGTGG 75505 Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191 | | | || || || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 75506 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 75565 Query 12192 GTCAGGGAGTTCGTTGAG 12209 ||| | ||||| || ||| Sbjct 75566 GTCCGCGAGTTTGTCGAG 75583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434597025680