Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq13 452 4e-122 >seq13 Length=704413 Score = 452 bits (500), Expect = 4e-122 Identities = 544/735 (74%), Gaps = 6/735 (1%) Strand=Plus/Minus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||| ||||||||| |||| | || | || ||||| ||||| || ||| ||| ||| Sbjct 568313 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 568254 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||||| | | |||| ||| |||| ||||||| ||||| | | Sbjct 568253 CCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 568194 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 | ||| ||||| | || || ||||| ||| | || || || |||| |||||| | Sbjct 568193 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 568134 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| ||||||| ||| || ||| || ||||||||||||||| |||||||| ||||| Sbjct 568133 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 568074 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| | |||||| || | |||||| | ||| |||||| || || ||||| || Sbjct 568073 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 568014 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 || | ||||||||||||||||||||| || ||||||||||||| ||| ||||||| Sbjct 568013 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 567954 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||| ||||||| |||||| || |||||||||||| | || ||||||||||| | |||||| Sbjct 567953 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 567894 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||||||| ||| ||| | |||| |||| || ||||| | | | | Sbjct 567893 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTT-GTGGATCG 567835 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| || | | |||||||||| |||||||| ||||||||| ||||||| Sbjct 567834 AGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGA 567775 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||||||||||||||||||||| | ||| |||||||| ||| | ||| |||| Sbjct 567774 TGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCG 567715 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 ||| |||||||||||||| ||||||| ||||||||| ||| || | ||| || | Sbjct 567714 GCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGT 567655 Query 79829 CGTACGTCTCCTTGACGCGCGG--GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 ||||||||| | ||||||| | ||||||||||||||||||||||||||||||||| Sbjct 567654 TGTACGTCTCGAT--CGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 567597 Query 79887 GAAGAGGTACTGGGG 79901 || | || ||| || Sbjct 567596 GAGCATGTGCTGCGG 567582 Score = 385 bits (426), Expect = 5e-102 Identities = 535/742 (72%), Gaps = 8/742 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTC--CCGCGAG 19160 || ||| || | ||||||| ||||||||||||||||| ||||||||| | ||||| | Sbjct 567582 CCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCG 567641 Query 19161 TCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTT 19220 || |||| ||| |||| ||| || || ||| ||||||||| ||||||| || | Sbjct 567642 ATCG--AGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCT 567699 Query 19221 TCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 |||||||||| ||| |||||||| | ||| || ||||| || | |||||||| | Sbjct 567700 TCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACG 567759 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 || || |||||||||||||| ||||||||| |||||||| |||||||||| | | | Sbjct 567760 ACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAG 567819 Query 19341 GGGGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 | || ||||| || | | | | || ||||| ||| ||| | ||| || ||| Sbjct 567820 GCGGCATCGGCCTCTCGATCCAC-AACATCCGCGCGACCGGTTCGTACATCGCCGGCACG 567878 Query 19400 AACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 ||||| || ||| ||| ||| |||| ||||||||||| | |||||||||||| | || Sbjct 567879 AACGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTA 567937 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 |||| ||||||| ||| ||| ||| |||| |||||||||||||||||||||| ||||| Sbjct 567938 CGTCGACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCA 567997 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 ||| ||| || | || |||||||| || ||| |||||| || | |||||| | ||| Sbjct 567998 CGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 568057 Query 19579 TCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 |||||| | ||| ||| | ||||| || ||||| ||||||||| || ||| || | Sbjct 568058 GCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAA 568117 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 || || |||| ||| | |||||| ||| || || || | ||| ||||||||||| Sbjct 568118 CGGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGA 568177 Query 19699 GGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCG 19758 | |||||| ||| | | | |||| |||| || |||| ||| Sbjct 568178 CGAGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATCCC 568237 Query 19759 GGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACAT 19818 |||| | | ||||| || ||||||| | |||||||||||| |||| || | ||| Sbjct 568238 CGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCAT 568297 Query 19819 GTGCTACAAGGACGCCGCGAAC 19840 | ||||||||| ||||| ||| Sbjct 568298 GCTCTACAAGGATGCCGCCAAC 568319 Score = 221 bits (244), Expect = 1e-52 Identities = 620/943 (66%), Gaps = 58/943 (6%) Strand=Plus/Minus Query 78184 GCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGC 78243 ||||| || || | ||||||||||||||||||||||| |||||||||||||| | |||| Sbjct 569459 GCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGC 569400 Query 78244 ATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGG 78303 || || |||| |||| |||| | | | || |||||||||||| |||||| Sbjct 569399 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 569340 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAG 78363 |||||| |||| ||||||||||| || | ||||||||| |||||||| |||||||| Sbjct 569339 TCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCAC 569280 Query 78364 ATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCG 78423 | |||| ||| ||| ||| ||||| || ||||| | | | | | || ||| Sbjct 569279 ACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCG 569220 Query 78424 --GCTCGC-ACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCC 78480 | ||| | || ||||| || |||||| | | | || || Sbjct 569219 TTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCG 569160 Query 78481 CGGACCAGGTGCC---GGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 ||| ||| ||| |||| | | |||||||||||| ||| ||||| |||| Sbjct 569159 CGG---AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAG 569103 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 ||||||| ||||||||||||||| ||||||||| || | ||||||| |||||||||| Sbjct 569102 ATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCG 569043 Query 78598 GTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT- 78656 || ||||| || ||| || || || || || | || ||| | |||| |||| Sbjct 569042 GTAGGCATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTC 568983 Query 78657 ---TAGGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATA 78711 | |||| |||||| | || ||| || || ||||| || || | || Sbjct 568982 AACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGG 568923 Query 78712 CCCTCGGACGCCGGCGA---------CCCCTTGAACGTCTCGTAAGATCC---CTC---- 78755 || | | ||| ||||| | ||||| ||| ||| | || ||| Sbjct 568922 CCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGCCA 568863 Query 78756 -----CTCCTTGGCG-AGT-----------TCGC---ATGACTCGAGCAGGGCCGCGTGG 78795 | | ||||| ||| |||| | ||||||| | || ||||| Sbjct 568862 GGGTGCGCGATGGCGTAGTCGCGAGCCATGTCGCACGACGACTCGATC---GCGGCGTGA 568806 Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGG 78855 || | | ||||||||| |||||| | |||||| | | | |||||||| ||| Sbjct 568805 TAGATCGTCTCGAAGATCTGGACGTTGAGGTGGCGCGCTTCAGGCGAGTCGAACGGCAGG 568746 Query 78856 CCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGC 78915 | ||| ||||||| | ||||| || ||||| || |||||| ||||||| |||||||| Sbjct 568745 CGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGG 568686 Query 78916 ATGTTGCT-CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAG 78974 | |||||| | || |||| ||| | ||||| |||| ||||||| ||||||||| Sbjct 568685 AAGTTGCTGCGCTC-GGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAG 568627 Query 78975 GTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTT 79034 ||| |||||||||| || |||| || || ||| || | | ||| Sbjct 568626 GTTGTACGTGACGACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCGCCGTTTTT 568567 Query 79035 GATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGC 79076 |||||| | ||| || ||| | ||| || |||||||| ||||| Sbjct 568566 GATGAACGACGGGAGCGCA-ATCGACGCGAGGTTGCAGACGGC 568525 Score = 187 bits (206), Expect = 3e-42 Identities = 564/862 (65%), Gaps = 68/862 (8%) Strand=Plus/Plus Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073 |||||||||| || ||||| ||| ||||||| |||| ||||| | ||| ||| Sbjct 568611 GGTCGTCACGTACAACCTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 568670 Query 20074 ---GCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 ||||| || | |||||||| ||||||| ||||| || ||||| || ||||| Sbjct 568671 CGAGCGCAGC---AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGA 568727 Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190 || |||||| ||| |||| | |||||| || | |||||| | |||||| Sbjct 568728 CGCCTTCATGGCCCTCCGCCTGCCGTTCGACTCGCCTGAAGCGCGCCACCTCAACGTCCA 568787 Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA-----------ACT- 20238 ||||||||| | | || ||||| || || | |||||||| ||| Sbjct 568788 GATCTTCGAGACGATCTATCACGCCGCGATCGAGTCGTCGTGCGACATGGCTCGCGACTA 568847 Query 20239 CGCCAAAGAGGACG-------GCCCG-----TACGAGACGTTCAAGGGG---------TC 20277 ||||| | | || ||||| ||| ||| ||||| | || Sbjct 568848 CGCCATCGCGCACCCTGGCGAGCCCGGCTACTACCCCTCGTACAAGGAGAACGGCGGCTC 568907 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTG 20337 ||||||| | | || || | ||| || ||||| |||||| || || | || Sbjct 568908 GCCCGCGAGCCACGGCCTCTTGCAGTACGATCTGTGGAACGTCACGCCGACGGACCTGTG 568967 Query 20338 GAGC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGT 20391 | | ||| | |||| |||| | ||||| | ||||||||| ||||| Sbjct 568968 GGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCG---CTCGT 569024 Query 20392 ---CGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGA 20448 |||||| ||||| |||||||||||| ||||||| | || ||||||||| ||||| Sbjct 569025 GTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTCGA 569084 Query 20449 GCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAA 20508 |||||||||| ||||||||||| || || || ||||| |||||| || ||| Sbjct 569085 GCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTC--CA-GGTCGT 569141 Query 20509 CAAGCACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGA 20564 ||| | ||||| |||||||| | | || ||||| | || |||| Sbjct 569142 CAACC-CCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGA 569200 Query 20565 ATGAAATTGTC-CGAGC--CGGCGGGAGCGTCCAGGCATTG---GATATCCCCCAGAACC 20618 | || || || | |||| || ||||| | | |||||| | | | Sbjct 569201 ACACGATCATCGCGCACAACGGCTCGA---TCCAGAACGTCCCCGGCATCCCCGACGAGC 569257 Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678 ||||| ||| |||| |||||| ||||| ||| | || ||| | |||||||| | || | Sbjct 569258 TCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGACCTCGCCG 569317 Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738 |||| |||||||| | |||||||||||| ||||||||||| ||| | | | |||| Sbjct 569318 CCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGA 569377 Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798 | ||||| |||| | || ||||| | ||||| ||| | || || ||||||||||||| Sbjct 569378 CCATGGCGCAGCTCACGTCGATGCACTTCTACGGATGGAAGAAAGGTCTCAAGACGGGCA 569437 Query 20799 TGTACTATCTGCGGACCCGAGC 20820 ||||||| || || ||||| || Sbjct 569438 TGTACTACCTCCGCACCCGCGC 569459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524265188320