Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13 349 4e-91 seq39 122 1e-22 seq21 118 1e-21 seq16 105 7e-18 >seq13 Length=704413 Score = 349 bits (386), Expect = 4e-91 Identities = 517/728 (71%), Gaps = 6/728 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250 ||||||||||||| | || |||||||| |||||| | |||| | || ||||||| Sbjct 567595 TCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATCG--AGACGTA 567652 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | ||| | ||||||||||||||| |||| || || |||||||| || || Sbjct 567653 CAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCAC 567712 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| || Sbjct 567713 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 567772 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| ||||||||| ||| || | |||||||||| | | || || ||||| | Sbjct 567773 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCT 567832 Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | | | | | ||| |||| |||| ||| | ||| || ||||||||| | | Sbjct 567833 CTCGATCCAC-AACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGA 567891 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||||||||| | |||||||||||| || |||||| ||||||| | Sbjct 567892 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAGGGAG 567951 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 567952 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 568011 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || || ||| || || | || ||| | ||| || ||| |||| Sbjct 568012 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 568071 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || ||||| || |||||||||||| | || ||| || ||| || ||| || Sbjct 568072 TTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 568131 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | |||||| |||| ||||| ||||| | |||||||| || ||||| || ||| Sbjct 568132 TCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 568191 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 | | | | ||||| |||| ||| |||| | || || | || | | Sbjct 568192 TCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATCCCCGCCCAGAAGCTCT 568251 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || ||||| || |||||| |||||||| | || | |||| |||||||||| Sbjct 568252 GGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGATG 568311 Query 53910 CGGTCAAC 53917 | | |||| Sbjct 568312 CCGCCAAC 568319 Score = 147 bits (162), Expect = 2e-30 Identities = 321/466 (69%), Gaps = 25/466 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTG---GCGCCAATGCCAACCGCGTCGACGGCTCAGATC 55534 ||| | |||||||| ||||||| ||||| ||||| ||||| ||||| |||||| Sbjct 569005 GGCATCCGCAACTC---GCTCGTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATC 569061 Query 55535 ATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTA 55594 | ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 569062 CTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTC 569121 Query 55595 GCAGGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAAC 55651 || || ||||| || | || ||| | | ||| || ||||| | | | Sbjct 569122 GCCGGCGAGTTC--CAGG-TCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGC 569178 Query 55652 AAGTGGAACC-CGCAGATCAAGACG--GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA 55707 ||||||| ||| ||| |||| ||| || | || ||||| || ||||||| Sbjct 569179 CTGTGGAACGACGC-GATGAAGAACACGATCATCGCGCACAACGGC---TCGATCCAGAA 569234 Query 55708 --TCTGGAGATTCCTCTGCGT-CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA 55764 || | ||| | || |||||| || ||| ||| ||||||||||| | || Sbjct 569235 CGTCCCCGGCATCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCA 569294 Query 55765 GAAGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTC 55823 ||| ||| | || ||| | || || || || |||| |||||||||||| ||||| | Sbjct 569295 AAAG-GTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGC 569353 Query 55824 TGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGT 55883 | ||| || | | | || | |||| || | | ||||||||||| ||||| | Sbjct 569354 TCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGAT 569413 Query 55884 GGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGC 55929 ||||||| || ||||||||||| |||||||| || || |||||||| Sbjct 569414 GGAAGAAAGGTCTCAAGACGGGCATGTACTACCTCCGCACCCGCGC 569459 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 75071 CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTC 75130 |||| | |||||||| | |||||||| |||||||| || ||| || || || | Sbjct 257942 CTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTCCAC 257883 Query 75131 GATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAA 75190 | ||||| |||||||||||||||| |||||||| || || || || ||| || Sbjct 257882 CAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGATGAA 257823 Query 75191 GTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 ||| ||||| | ||| || ||| |||||| ||| ||||||| Sbjct 257822 GTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCC 257780 >seq39 Length=13956 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| || | ||||||||| |||||||| || || ||||| || ||||| Sbjct 6323 CGTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTG 6264 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || ||||| | ||||| ||||||| ||| || || ||||| || | || Sbjct 6263 GCCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCGAC 6204 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || ||||||||||| || || |||||||| ||||||| ||||||| |||||| || Sbjct 6203 GATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCC 6144 Query 152208 CG 152209 || Sbjct 6143 CG 6142 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| || || |||||||| || |||||||||||||| || Sbjct 6322 GTGAAGATGTAACGAGCGCTGGCCGCGTCCTTGCCGCCCTGGAGACGCGTACCGAACTGG 6263 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| |||||||| || || | | ||| Sbjct 6262 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACAAAGTTCTGCGCGAGGCCGACG 6203 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || || || || || ||||| ||||||| ||||||| | ||||||| Sbjct 6202 ATGGTGCCCTGCAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 6143 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 6142 GAAAGCTGGCCGACCT 6127 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 119084 TTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCGT 119141 ||||| |||||||| ||||| ||||| || ||||| ||| | || ||| ||||||| Sbjct 4024 TTGGCGAGCTTGGCGCCGTAGCCGTTTCGTCCACCCGTC--GTCTTGGCCTCGTCGTCGT 3967 Query 119142 TGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 3966 CGTAGTTTGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 3921 >seq21 Length=241866 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||| ||||| |||||||| | |||||||| || || | ||| Sbjct 75577 AAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCGTCGGGCTGGTCCTG 75518 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 ||||||||| |||||||| |||||||||| || | ||||| |||||||||||||| || Sbjct 75517 CTGGAGCATGCGCCACATGCCCTCGACGTAGTCACGAGCGTGTCCCCAGTCGCGCTTCGC 75458 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 75457 GTCGAGGTTACCGAG 75443 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||| ||||| || || | | || || || || Sbjct 75589 CGCCTTCTCGACAAACTCGCGGACGGGGTGGGTCTCGCCAGTCGCGAGGACAAAGTCGTC 75530 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| |||||| | ||| |||||||| | | ||||||||| ||||| ||||| Sbjct 75529 GGGCTGGTCCTGCTGGAGCATGCGCCACATGCCCTCGACGTAGTCACGAGCGTGTCCCCA 75470 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAG 124627 ||||||||| || || ||||| ||||| Sbjct 75469 GTCGCGCTTCGCGTCGAGGTTACCGAG 75443 >seq16 Length=587835 Score = 105 bits (116), Expect = 7e-18 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||||||||| | ||||||||| || ||||| | ||| |||| || || | || Sbjct 221761 CAACAAACTCGCGAACAGGGTGCGTCTCGCCCGTCGCGAGGACATAGTCGTCCGG-CTGG 221819 Query 158999 GCT-GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGC 159057 || | || | |||| |||||||| | |||||||| || ||||||| |||||||||||| Sbjct 221820 TCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGC 221879 Query 159058 TTGGCATCCATGTTCCCGAG 159077 |||||||| | ||| ||||| Sbjct 221880 TTGGCATCGAGGTTGCCGAG 221899 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||| | |||||| || | ||||||||| ||||| | | || | || || Sbjct 221753 CGCCTTCTCAACAAACTCGCGAACAGGGTGCGTCTCGCCCGTCGCGAGGACATAGTCGTC 221812 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 221813 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 221871 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 221872 AGTCGCGCTTGGCATCGAGGTTGCCGAG 221899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215466464400