Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq39 165 9e-36
seq2 161 1e-34
seq3 125 8e-24
seq6 111 2e-19
seq12 104 3e-17
seq13 86.0 7e-12
>seq39
Length=13956
Score = 165 bits (182), Expect = 9e-36
Identities = 211/289 (73%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113
|||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || |
Sbjct 6127 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 6186
Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173
|||| ||||||||||| ||| ||| || |||||||||||||| || ||| | |||
Sbjct 6187 CGCTGCAGGGCACCATCGTCGGCCTCGCGCAGAACTTTGTCGGCAGCAACAACATCAACG 6246
Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233
| ||||| || || ||||| || || || ||| || |||||||| || || |||
Sbjct 6247 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTCCAGGGCGGCAAGGACGCGGCCAGCG 6306
Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291
| |||||||||||||| ||| |||| | ||||||| | | ||| |||| |||||
Sbjct 6307 CTCGTTACATCTTCACGAACGTGGCGCAGAT--CACGCGCACGCTCTTCCACCCCTCGGA 6364
Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340
||| ||| | ||| | ||| | || ||||| ||| | ||||||||
Sbjct 6365 CGACGCGATCCTCGACTACCTTAACGACGACGGCCAGAGCATCGAGCCG 6413
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/112 (78%), Gaps = 4/112 (4%)
Strand=Plus/Plus
Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420
|||| |||||||| ||||| ||||| |||| | || ||| |||||| |||||||
Sbjct 3915 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCAAACTACGACGACGAC 3974
Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAA 30470
||| || || |||||||||||||| |||||||| || |||||||||||
Sbjct 3975 GAGGCCAAGACG--ACGGGTGGACGAAACGGCTACGGCGCCAAGCTCGCCAA 4024
>seq2
Length=1846957
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 971410 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 971351
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || |||||||||||||||||||| ||||| ||||||
Sbjct 971350 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 971291
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || || || || ||||| || ||||| | ||| || || ||| ||||| ||
Sbjct 971290 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGC-GACTACAA 971232
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || ||||| || ||| | | ||||||||
Sbjct 971231 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 971184
Score = 123 bits (136), Expect = 3e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
|| ||||| ||||| ||||| || | ||| | || | ||||| || ||||||||
Sbjct 971079 ATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGAT 971020
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
||||||||||| ||||| ||||| ||||| | || || || || ||||| ||||||||
Sbjct 971019 AAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 970960
Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
| |||||| || | || |||||| |||| || || || || || || || || |||||
Sbjct 970959 GGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGT 970900
Query 27622 CTTCGCGGTGG 27632
|| ||||| ||
Sbjct 970899 CTCCGCGGAGG 970889
Score = 109 bits (120), Expect = 6e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
|||||||| || |||||||||||||| || ||||| ||||||||||| | || || ||
Sbjct 970605 AAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCG 970546
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| || ||||| | || || || |||| || || |||| || || || ||
Sbjct 970545 GGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACG 970486
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|| || || || | |||||||||||||||
Sbjct 970485 CTGCACCTGGTGCTTCGTCTTCGCGGTGGA 970456
>seq3
Length=1525690
Score = 125 bits (138), Expect = 8e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||
Sbjct 1175285 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1175344
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||||| |||||| || | || || || |||| || || || ||
Sbjct 1175345 GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1175404
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 1175405 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1175433
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||
Sbjct 1175725 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1175784
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | |||||| || | || || || |||| || || || ||
Sbjct 1175785 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1175844
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 1175845 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1175873
>seq6
Length=1157922
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541
||||||| || || |||||||||||||| || || || ||||||||||| || || || |
Sbjct 265931 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCG 265872
Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601
| || ||||| |||||||| | || || || | ||||| || |||| ||||| || |
Sbjct 265871 CCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGA 265812
Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || || ||| | ||||| ||||| ||
Sbjct 265811 CCCTCCACCTCGTCCTCCGTCTCCGCGGCGG 265781
>seq12
Length=765624
Score = 104 bits (114), Expect = 3e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||||| || || || ||
Sbjct 75636 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCC 75695
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | || ||||| | ||||| || |||| ||||| || ||
Sbjct 75696 GGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 75755
Query 27604 CTTCATCTAGTC 27615
||||| || |||
Sbjct 75756 CTTCACCTCGTC 75767
>seq13
Length=704413
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
|| || || || || |||||||||||||||||||| || |||||||| ||||| | ||||
Sbjct 569459 GCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGC 569400
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| || |||||| ||| | || || | | | || ||| || ||||| |||||
Sbjct 569399 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 569340
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||| || || || || || || | || || | |||||| | || |||||
Sbjct 569339 TCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCAC 569280
Query 80212 ACTGT 80216
|| ||
Sbjct 569279 ACGGT 569275
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753
|||||||| || || | |||||| |||| || || ||||| || ||||| ||||
Sbjct 568758 GTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGAT 568699
Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813
|||||||||||| ||| |||||||||||| | ||||| |||| |||||
Sbjct 568698 CGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGAT 568639
Query 80814 GACGCGGTTCAGGTTG 80829
|| |||||||||||||
Sbjct 568638 GATGCGGTTCAGGTTG 568623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309843947360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |