Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq12 149 1e-30
seq2 149 1e-30
seq3 127 5e-24
seq6 114 3e-20
seq13 105 2e-17
seq18 89.7 1e-12
>seq12
Length=765624
Score = 149 bits (164), Expect = 1e-30
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||||||| || ||||| || |||||||| || |||| ||||| | || ||
Sbjct 75769 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 75710
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || |||||||| || | || |||||||||
Sbjct 75709 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 75650
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|||||||| || ||||| ||||| ||||| || || |||||||| ||||||
Sbjct 75649 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 75593
>seq2
Length=1846957
Score = 149 bits (164), Expect = 1e-30
Identities = 139/177 (79%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| ||||| |||||||||| ||| || | || ||
Sbjct 970904 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCC 970963
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| | ||| |||||||| ||||| | ||| ||||| |||
Sbjct 970964 TCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCC 971023
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
|| ||||| || ||||| ||||||||||| || || |||||||||||||||
Sbjct 971024 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATC 971080
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| || || || || ||||| || |||||||| || || || || | || || ||
Sbjct 971202 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 971261
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
||||||||||| |||||||| | ||| || ||||| ||||| | ||| |||||||||||
Sbjct 971262 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGA 971321
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || ||||| ||||||||||| || || |||||||| ||||| |||||
Sbjct 971322 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 971381
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| || || | ||||||
Sbjct 971382 CCGGTGAGGGTCTTGACGAAGATCTGCAT 971410
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || ||||| || || |||||||| |||||||| ||||| | ||| ||
Sbjct 970463 CGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTG 970522
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||| || || |||||||| || |||||||| | ||| || ||||| ||||| | ||
Sbjct 970523 CGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCC 970582
Query 211014 TCCTTGTCCTGGATCTT 211030
|||||||||||||||||
Sbjct 970583 TCCTTGTCCTGGATCTT 970599
>seq3
Length=1525690
Score = 127 bits (140), Expect = 5e-24
Identities = 105/128 (82%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| |||||||| ||||||| ||| || | |||||
Sbjct 1175418 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCC 1175359
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||||||||| || || ||||| ||||| | ||| |||||||||
Sbjct 1175358 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1175299
Query 211023 TGGATCTT 211030
||||||||
Sbjct 1175298 TGGATCTT 1175291
Score = 123 bits (136), Expect = 6e-23
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || |||||||| |||||||| ||||||| ||| || | || ||
Sbjct 1175858 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 1175799
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||||||||| || || ||||| ||||| | ||| |||||||||
Sbjct 1175798 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1175739
Query 211023 TGGATCTT 211030
||||||||
Sbjct 1175738 TGGATCTT 1175731
>seq6
Length=1157922
Score = 114 bits (126), Expect = 3e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| || |||| ||| || | || ||
Sbjct 265796 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 265855
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || ||||| || || | || |||||||||
Sbjct 265856 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 265915
Query 211023 TGGATCTT 211030
||||||||
Sbjct 265916 TGGATCTT 265923
>seq13
Length=704413
Score = 105 bits (116), Expect = 2e-17
Identities = 171/246 (70%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179
|||||| ||||| |||||||| | ||| ||| | || ||| |||| | | |
Sbjct 568313 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 568254
Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239
||| |||| |||||| ||| || ||||| || || ||||||||||||| |
Sbjct 568253 CCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 568194
Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299
|||||||| ||| || || ||||| || | ||||||||| ||||| ||||||||
Sbjct 568193 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 568134
Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359
||| ||| | |||| | || || || | |||||||||||| | | |||| | |||
Sbjct 568133 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 568074
Query 178360 ATAGAA 178365
| ||||
Sbjct 568073 AAAGAA 568068
>seq18
Length=573879
Score = 89.7 bits (98), Expect = 1e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 210929 TTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAG 210988
||| | ||| || |||| || || | || ||||| |||||||||| ||||||| ||
Sbjct 149746 TTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAG 149687
Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048
||| || ||||| || || || || ||||||||||||| ||| ||||| |||||
Sbjct 149686 GCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTGGATCAACACTTTGACGTTGTCGAT 149627
Query 211049 GGTGTCAGAGCT 211060
|||||| |||||
Sbjct 149626 GGTGTCCGAGCT 149615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150841572470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |