Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12 149 1e-30 seq2 149 1e-30 seq3 127 5e-24 seq6 114 3e-20 seq13 105 2e-17 seq18 89.7 1e-12 >seq12 Length=765624 Score = 149 bits (164), Expect = 1e-30 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || |||||||| || |||| ||||| | || || Sbjct 75769 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 75710 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 75709 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 75650 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| ||||| ||||| || || |||||||| |||||| Sbjct 75649 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 75593 >seq2 Length=1846957 Score = 149 bits (164), Expect = 1e-30 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| ||||| |||||||||| ||| || | || || Sbjct 970904 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCC 970963 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| |||||||| ||||| | ||| ||||| ||| Sbjct 970964 TCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCC 971023 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| || ||||| ||||||||||| || || ||||||||||||||| Sbjct 971024 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATC 971080 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || || ||||| || |||||||| || || || || | || || || Sbjct 971202 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 971261 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| | ||| || ||||| ||||| | ||| ||||||||||| Sbjct 971262 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGA 971321 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || ||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 971322 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 971381 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || | |||||| Sbjct 971382 CCGGTGAGGGTCTTGACGAAGATCTGCAT 971410 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || || |||||||| |||||||| ||||| | ||| || Sbjct 970463 CGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTG 970522 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || |||||||| | ||| || ||||| ||||| | || Sbjct 970523 CGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCC 970582 Query 211014 TCCTTGTCCTGGATCTT 211030 ||||||||||||||||| Sbjct 970583 TCCTTGTCCTGGATCTT 970599 >seq3 Length=1525690 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||||| ||| || | ||||| Sbjct 1175418 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCC 1175359 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| || || ||||| ||||| | ||| ||||||||| Sbjct 1175358 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1175299 Query 211023 TGGATCTT 211030 |||||||| Sbjct 1175298 TGGATCTT 1175291 Score = 123 bits (136), Expect = 6e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||||| ||| || | || || Sbjct 1175858 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 1175799 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| || || ||||| ||||| | ||| ||||||||| Sbjct 1175798 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1175739 Query 211023 TGGATCTT 211030 |||||||| Sbjct 1175738 TGGATCTT 1175731 >seq6 Length=1157922 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || |||| ||| || | || || Sbjct 265796 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 265855 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 265856 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 265915 Query 211023 TGGATCTT 211030 |||||||| Sbjct 265916 TGGATCTT 265923 >seq13 Length=704413 Score = 105 bits (116), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179 |||||| ||||| |||||||| | ||| ||| | || ||| |||| | | | Sbjct 568313 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 568254 Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| |||| |||||| ||| || ||||| || || ||||||||||||| | Sbjct 568253 CCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 568194 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299 |||||||| ||| || || ||||| || | ||||||||| ||||| |||||||| Sbjct 568193 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 568134 Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 ||| ||| | |||| | || || || | |||||||||||| | | |||| | ||| Sbjct 568133 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 568074 Query 178360 ATAGAA 178365 | |||| Sbjct 568073 AAAGAA 568068 >seq18 Length=573879 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 210929 TTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAG 210988 ||| | ||| || |||| || || | || ||||| |||||||||| ||||||| || Sbjct 149746 TTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAG 149687 Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 ||| || ||||| || || || || ||||||||||||| ||| ||||| ||||| Sbjct 149686 GCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTGGATCAACACTTTGACGTTGTCGAT 149627 Query 211049 GGTGTCAGAGCT 211060 |||||| ||||| Sbjct 149626 GGTGTCCGAGCT 149615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150841572470