Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 152 1e-31 seq12 129 1e-24 seq6 96.9 7e-15 seq3 93.3 9e-14 seq10 84.2 5e-11 >seq2 Length=1846957 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| | | |||||||| | || || || |||||||||||||| Sbjct 971184 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 971243 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || |||||||| || || ||||| || Sbjct 971244 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 971303 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| Sbjct 971304 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 971363 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 971364 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 971410 Score = 123 bits (136), Expect = 5e-23 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| ||||| || | ||| ||||| ||||||||||| || | | Sbjct 970457 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 970516 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || ||||| || |||||||| || || ||||| || Sbjct 970517 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 970576 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTA-CGGTATCG 283031 |||||||||||||| |||||||| || || | | |||||| Sbjct 970577 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACCTGTATCG 970616 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||| || || || | ||| || || || ||||| || || ||||| || ||| Sbjct 970925 TCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 970984 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || |||||||| || || |||||||| || || ||||| || || ||| | Sbjct 970985 ATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTG 971044 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| ||||| || | ||||| |||||||||||| Sbjct 971045 TCGATGGTGTCGGACGACTCGACCTCGAGAGTGATC 971080 >seq12 Length=765624 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || |||||||| ||||| || || || ||||| ||| Sbjct 75748 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 75689 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| || || ||||||||||| |||||||| || || ||| | Sbjct 75688 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 75629 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| |||||||| | ||||| ||||| |||||| Sbjct 75628 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 75593 >seq6 Length=1157922 Score = 96.9 bits (106), Expect = 7e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| |||||||| ||||| || || || ||||| ||| Sbjct 265817 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 265876 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 |||| || || ||||| || || ||||||||||| |||||||| || || || Sbjct 265877 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC 265932 >seq3 Length=1525690 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || |||||||| || || ||||| || ||| Sbjct 1175397 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 1175338 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||| || ||||| || || ||||||||||| |||||||| || || || Sbjct 1175337 ATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC 1175282 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || || ||||| || || ||||| || ||| Sbjct 1175837 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 1175778 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||| || ||||| || || ||||||||||| |||||||| || || || Sbjct 1175777 ATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC 1175722 >seq10 Length=870310 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 315704 CACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTT 315763 ||||||| |||||||||| ||||||||||||||| || || |||| ||| ||||||| Sbjct 698149 CACCGAGCGCATCGCGGTCCAAAAAGTTGGTCGGCTCGTCGAGGACGAGGACCTGGGGTT 698090 Query 315764 GTTGCCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGA 315823 ||| | |||||| |||| |||| ||| | || || || || |||| ||||| | Sbjct 698089 TGGACCACATGGCGGCGGCGATGACGACCTTGACCTTCTGTCCGCCCGACAAACCACGCA 698030 Query 315824 T 315824 | Sbjct 698029 T 698029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738153915012