Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 158 3e-33 seq12 120 7e-22 seq3 118 3e-21 seq6 95.1 3e-14 >seq2 Length=1846957 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 971407 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 971348 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || ||||||||||| |||||||| Sbjct 971347 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 971288 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| || || || | || || ||| || ||| || Sbjct 971287 CGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAACATC 971228 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || || || ||||| ||||| || ||||| Sbjct 971227 CAGAAGGAGTCTACACTCCATCTGGTGTTGAG 971196 Score = 134 bits (148), Expect = 3e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 |||||| |||||||| || || ||||||||||| |||||||| ||||||||||| Sbjct 971080 GATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGA 971021 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 || || ||||||||||| ||||| || || | |||||||| || || |||||||| || Sbjct 971020 TAAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 970961 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | |||||| | |||||||| |||| ||||| || || || || || || Sbjct 970960 CGGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGT 970907 >seq12 Length=765624 Score = 120 bits (132), Expect = 7e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| ||||| |||||||| ||||| ||||| Sbjct 75593 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 75652 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || ||||| || |||||||| || || ||||||||||| || |||||||| || Sbjct 75653 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 75712 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || || | || || ||| |||| || || || || || || || || Sbjct 75713 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 75766 >seq3 Length=1525690 Score = 118 bits (130), Expect = 3e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || || Sbjct 1175291 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1175350 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | |||||| | ||||| ||| |||| ||||| || || || || Sbjct 1175351 CAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1175410 Query 178125 CTTGT 178129 || || Sbjct 1175411 CTCGT 1175415 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || || Sbjct 1175731 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1175790 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | ||||| ||| |||| ||||| || || || || Sbjct 1175791 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1175850 Query 178125 CTTGT 178129 || || Sbjct 1175851 CTCGT 1175855 >seq6 Length=1157922 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||| || || ||||||||||| || Sbjct 265923 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 265864 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | || || ||| |||| || || || || || || Sbjct 265863 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 265804 Query 178125 CTTGT 178129 || || Sbjct 265803 CTCGT 265799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729997021132