Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03- 01] 78 sequences; 20,389,818 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 seq6 131 2e-25 seq12 118 1e-21 seq3 89.7 5e-13 seq18 82.4 7e-11 >seq2 Length=1846957 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | | ||||||||||| || || ||||||||| ||||| |||||| Sbjct 971183 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 971242 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| || ||||||||||| ||||| |||| |||||| ||||| | || Sbjct 971243 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 971302 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || || | ||| | | | ||||| ||||| | Sbjct 971303 GATTCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGA 971361 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 971362 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 971411 Score = 100 bits (110), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||| ||||| || ||||| || || Sbjct 970888 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGA 970947 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||||||||| || ||||| |||| |||||||||||| | || Sbjct 970948 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGG 971007 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| | || || | ||| | | | |||||| |||||| | Sbjct 971008 GATTCCCTCCTTATCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGA 971066 Query 41814 CCTC 41817 |||| Sbjct 971067 CCTC 971070 >seq6 Length=1157922 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || || || ||||||||| ||||| ||||| || Sbjct 265780 GCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 265839 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 265840 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 265899 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || |||||||||| ||| || ||||| Sbjct 265900 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA 265931 >seq12 Length=765624 Score = 118 bits (130), Expect = 1e-21 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| ||||||||||| |||| |||||||||||||||||||| Sbjct 75749 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 75690 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || |||||||| ||||| | ||| | || |||||||||| ||| || Sbjct 75689 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 75642 >seq3 Length=1525690 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 1175874 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 1175815 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 1175814 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 1175755 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 1175754 GATTCCCTCCTTGTCCTGGATCTT 1175731 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 1175433 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1175374 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 1175373 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1175314 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 1175313 ATTCCCTCCTTGTCCTGGATCTT 1175291 >seq18 Length=573879 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCT-GAATGTTATAGTCGG 41693 |||||| ||||| || ||||| |||| || | | ||| | ||| ||| ||||| | Sbjct 149788 GCCGCCACGTAGGCGAGTGACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCG 149730 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||| ||||| |||| ||||||||||||| |||| ||||||||||| ||||| | | Sbjct 149729 AGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCG 149670 Query 41754 GAACGCTCTCCTTGTCC 41770 | |||| ||||||| Sbjct 149669 GGACGCCAAGCTTGTCC 149653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303549253600