Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq17 104 5e-17
seq16 104 5e-17
seq11 104 5e-17
seq7 104 5e-17
seq21 91.5 3e-13
seq1 86.0 1e-11
>seq17
Length=551157
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 346763 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 346822
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 346823 CCCACATTGGGC 346834
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 360999 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 360940
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 360939 CCCACATTGGGC 360928
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 399025 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 398966
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 398965 CCCACATTGGGC 398954
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 412062 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 412121
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 412122 CCCACATTGGGC 412133
>seq16
Length=742613
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 525906 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 525847
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 525846 CCCACATTGGGC 525835
>seq11
Length=913747
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 494052 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494111
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 494112 CCCACATTGGGC 494123
>seq7
Length=1146271
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 124901 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 124960
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 124961 CCCACATTGGGC 124972
>seq21
Length=276254
Score = 91.5 bits (100), Expect = 3e-13
Identities = 112/152 (74%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 230441 GTCGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499
|||| ||| || ||||||||||| || ||| ||||||||||||| ||||| || |||
Sbjct 32228 GTCGGCTTGATCGGCATGAACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGAC 32169
Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT 230559
|| | |||| || || || |||| || ||||||| | ||||||| || | |||
Sbjct 32168 CGATTGCTTGTCGCGCTCGGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTT 32109
Query 230560 ATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591
|||||| | || ||| | | || ||||||||
Sbjct 32108 ATGGAGATGATCTCGATGGAGGGCAAGACCAA 32077
>seq1
Length=1516062
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 319855 GAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCC 319914
|||||||| || || | ||||||||| | || |||||||| ||||| || || || | |
Sbjct 78674 GAGGGGAAGCCCTCGACCTGGCCGTTGTCGATCGCGCGCATGAGGGTCGACTTGCCGGAC 78733
Query 319915 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGG 319956
||||| | ||||| ||||||||||||| ||| || || |||
Sbjct 78734 CCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGG 78775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823281671390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |