Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq17 104 5e-17 seq16 104 5e-17 seq11 104 5e-17 seq7 104 5e-17 seq21 91.5 3e-13 seq1 86.0 1e-11 >seq17 Length=551157 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 346763 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 346822 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 346823 CCCACATTGGGC 346834 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 360999 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 360940 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 360939 CCCACATTGGGC 360928 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 399025 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 398966 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 398965 CCCACATTGGGC 398954 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 412062 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 412121 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 412122 CCCACATTGGGC 412133 >seq16 Length=742613 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 525906 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 525847 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 525846 CCCACATTGGGC 525835 >seq11 Length=913747 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 494052 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494111 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 494112 CCCACATTGGGC 494123 >seq7 Length=1146271 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 124901 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 124960 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 124961 CCCACATTGGGC 124972 >seq21 Length=276254 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 230441 GTCGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499 |||| ||| || ||||||||||| || ||| ||||||||||||| ||||| || ||| Sbjct 32228 GTCGGCTTGATCGGCATGAACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGAC 32169 Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT 230559 || | |||| || || || |||| || ||||||| | ||||||| || | ||| Sbjct 32168 CGATTGCTTGTCGCGCTCGGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTT 32109 Query 230560 ATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591 |||||| | || ||| | | || |||||||| Sbjct 32108 ATGGAGATGATCTCGATGGAGGGCAAGACCAA 32077 >seq1 Length=1516062 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 319855 GAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCC 319914 |||||||| || || | ||||||||| | || |||||||| ||||| || || || | | Sbjct 78674 GAGGGGAAGCCCTCGACCTGGCCGTTGTCGATCGCGCGCATGAGGGTCGACTTGCCGGAC 78733 Query 319915 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGG 319956 ||||| | ||||| ||||||||||||| ||| || || ||| Sbjct 78734 CCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGG 78775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823281671390