Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq15 91.5 2e-13 seq6 89.7 6e-13 >seq5 Length=1227376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || |||||| ||||||||||| || | || || || | Sbjct 829483 ACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCC 829424 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || | ||||||||||| | ||| | || |||||| Sbjct 829423 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 829364 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | |||||| ||| || || |||| |||| Sbjct 829363 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGA 829305 Query 43147 T 43147 | Sbjct 829304 T 829304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||| | ||||| || |||| || |||||||| || ||||| Sbjct 829149 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 829090 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| ||||||||||||| || | || |||||||||| ||| || Sbjct 829089 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 829042 >seq15 Length=767120 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || || Sbjct 225814 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 225873 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 225874 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 225932 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | | |||||| ||| || || |||| ||||| Sbjct 225933 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 225969 >seq6 Length=1203005 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || |||||||| | || || || |||| || |||||||| || ||||| Sbjct 882685 TCCTTTTGGATGTTGTAATCCGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 882744 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 882745 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 882803 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | | ||||||| ||| || || |||| ||||| Sbjct 882804 GTCAATCGTGTCGGACGACTCAACCTCGAGGGTGAT 882839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817221170840