Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq25 196 1e-44
seq1 84.2 5e-11
>seq25
Length=115453
Score = 196 bits (216), Expect = 1e-44
Identities = 444/666 (67%), Gaps = 15/666 (2%)
Strand=Plus/Plus
Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892
||||| ||||| ||| ||||| || ||| | || |||||| | | || |||
Sbjct 2950 TTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCCGAGCGACCG 3009
Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952
||||||||| | ||||| || || ||||| || ||| || ||||| ||| ||| | ||
Sbjct 3010 CAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATC 3069
Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012
|||||||||| | ||| || || | | || || ||| | |||||||||||||||
Sbjct 3070 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAAC 3129
Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072
||||| || || ||||| |||||||| || | | ||| | ||||||||
Sbjct 3130 GCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCG 3189
Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129
|||| ||||| || |||||||| | ||||| ||| || || || || |||
Sbjct 3190 ATCGAGGGCATCTACGACACGCTCA---AGACGTGCGCGCTCATCTCCAAGACGGCCGGC 3246
Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189
|| ||||||||||| || ||||||||| |||| || ||||||||| || || ||
Sbjct 3247 GGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAAC 3306
Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249
|| | | || ||| | ||| | || || | | |||||| | | | ||
Sbjct 3307 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTC 3366
Query 249250 AACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCAC 249303
|||||| ||| ||||| ||| |||||||||| || | || |||||||
Sbjct 3367 GACCAGGGCGGCAACAAGCGCC---CGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCAC 3423
Query 249304 GCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCG 249363
||||| || || |||||||| ||| | |||||| ||||||| ||| | | |||
Sbjct 3424 GCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCG 3483
Query 249364 CGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGAC 249423
|| ||| | |||| | ||| ||| | ||||| | |||||| || ||| || ||
Sbjct 3484 CGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAAC 3543
Query 249424 GGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCC 249483
||||| ||| | || | | || |||| || || | |||| ||| | |||||| |
Sbjct 3544 GGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGAC 3603
Query 249484 GACTTC 249489
|| |||
Sbjct 3604 GAGTTC 3609
>seq1
Length=1516062
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264
||||| |||||| | | ||||| |||||||| ||| | ||||| || ||||||||
Sbjct 809334 CCGCCGTTCAAGATAATCATCCTCGACGAGGCAGACTCGATGACCCAGGATGCGCAGTCT 809393
Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324
||||||||||| | ||||||| ||||| | || || || ||| || | ||||||
Sbjct 809394 GCCCTCCGCCGCATCATGGAGAACCACTCGAAGATTACACGGTTCTGCTTGATCTGCAAC 809453
Query 254325 TACGTG 254330
||||||
Sbjct 809454 TACGTG 809459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765670845504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |