Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq25 196 1e-44 seq1 84.2 5e-11 >seq25 Length=115453 Score = 196 bits (216), Expect = 1e-44 Identities = 444/666 (67%), Gaps = 15/666 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| ||||| || ||| | || |||||| | | || ||| Sbjct 2950 TTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCCGAGCGACCG 3009 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| || ||| || ||||| ||| ||| | || Sbjct 3010 CAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATC 3069 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| | ||| || || | | || || ||| | ||||||||||||||| Sbjct 3070 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAAC 3129 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| || || ||||| |||||||| || | | ||| | |||||||| Sbjct 3130 GCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCG 3189 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || |||||||| | ||||| ||| || || || || ||| Sbjct 3190 ATCGAGGGCATCTACGACACGCTCA---AGACGTGCGCGCTCATCTCCAAGACGGCCGGC 3246 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||||||||| || ||||||||| |||| || ||||||||| || || || Sbjct 3247 GGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAAC 3306 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || ||| | ||| | || || | | |||||| | | | || Sbjct 3307 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTC 3366 Query 249250 AACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCAC 249303 |||||| ||| ||||| ||| |||||||||| || | || ||||||| Sbjct 3367 GACCAGGGCGGCAACAAGCGCC---CGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCAC 3423 Query 249304 GCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCG 249363 ||||| || || |||||||| ||| | |||||| ||||||| ||| | | ||| Sbjct 3424 GCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCG 3483 Query 249364 CGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGAC 249423 || ||| | |||| | ||| ||| | ||||| | |||||| || ||| || || Sbjct 3484 CGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAAC 3543 Query 249424 GGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCC 249483 ||||| ||| | || | | || |||| || || | |||| ||| | |||||| | Sbjct 3544 GGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGAC 3603 Query 249484 GACTTC 249489 || ||| Sbjct 3604 GAGTTC 3609 >seq1 Length=1516062 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 ||||| |||||| | | ||||| |||||||| ||| | ||||| || |||||||| Sbjct 809334 CCGCCGTTCAAGATAATCATCCTCGACGAGGCAGACTCGATGACCCAGGATGCGCAGTCT 809393 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 ||||||||||| | ||||||| ||||| | || || || ||| || | |||||| Sbjct 809394 GCCCTCCGCCGCATCATGGAGAACCACTCGAAGATTACACGGTTCTGCTTGATCTGCAAC 809453 Query 254325 TACGTG 254330 |||||| Sbjct 809454 TACGTG 809459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765670845504