Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq5 98.7 8e-16
seq17 82.4 6e-11
seq6 82.4 6e-11
>seq5
Length=1227376
Score = 98.7 bits (108), Expect = 8e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||||||| ||||||||||||||| |||||| | || ||| |||| ||
Sbjct 830639 ACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCA 830580
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || |||||||| ||||| ||||| ||||| || || | ||||||||||||
Sbjct 830579 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCC 830523
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||||||| |||||||||||| |||||||| || ||| |||| ||
Sbjct 829476 ACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAAAGCGTGCGTCCGTCCTCA 829417
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || |||||||| ||||| ||||| ||||| || || | ||||||||||||
Sbjct 829416 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCC 829360
>seq17
Length=551157
Score = 82.4 bits (90), Expect = 6e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||||||||| || ||| |||| || || || || ||||||||
Sbjct 51340 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 51281
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||||| ||||| |||||||| || | ||||||||||||
Sbjct 51280 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 51241
>seq6
Length=1203005
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| | ||| || || || | |||||| || ||||| || |||||||| || |
Sbjct 882649 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGAC 882708
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| ||| |||| || || || || || ||||| ||||| ||||| |||||||||||
Sbjct 882709 AAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 882768
Query 45230 ACACCCTCCTTGTCC 45244
| ||||||||||||
Sbjct 882769 ATGCCCTCCTTGTCC 882783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395074944806113
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |