Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq25 315 6e-81
seq5 98.7 9e-16
seq6 87.8 2e-12
>seq25
Length=115453
Score = 315 bits (348), Expect = 6e-81
Identities = 515/740 (70%), Gaps = 4/740 (1%)
Strand=Plus/Minus
Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203
||||||||||||||| | || |||||||||||||||| | ||||| ||| || |||
Sbjct 3734 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTACCAG 3675
Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263
| |||| ||| ||| ||| | | || || | ||| ||||| | | ||| |
Sbjct 3674 AGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAACAGC 3615
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321
| | || ||| | ||||| ||| |||||||| | | ||| || || | ||
Sbjct 3614 TCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCA--GGGCAGAAGA 3557
Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
| ||| || | || || || ||| || || || || ||||| || ||
Sbjct 3556 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAA 3497
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||||| ||||| ||||| |||||||| |||||| |||||| | || | || |
Sbjct 3496 AGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 3437
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| ||||
Sbjct 3436 CGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGC 3377
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
||||||| |||||||| || || |||||||||||||| | ||||| || | || ||||
Sbjct 3376 CGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 3317
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621
| || |||| ||| || | ||| || | || || | |||||| | ||
Sbjct 3316 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGA 3257
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
||| ||||| ||| ||| || || || | |||||| || || |||||||||||||
Sbjct 3256 GACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGC 3197
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
||||||| ||| || || ||| ||| | ||| ||||| || | |||| | ||||
Sbjct 3196 CCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 3137
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
| |||| ||| || ||||| ||||||||||||||| | | |||||| || ||||
Sbjct 3136 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 3077
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
|||| ||||| ||| |||||||| || ||||| || |||| ||||| ||||| | ||
Sbjct 3076 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCA 3017
Query 23862 TGTATTGAGGTCTCTCGACC 23881
||| || |||| |||| ||
Sbjct 3016 TGTGCTGCGGTCGCTCGGCC 2997
Score = 170 bits (188), Expect = 2e-37
Identities = 400/597 (67%), Gaps = 9/597 (2%)
Strand=Plus/Minus
Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158
|| || || ||| || || |||| |||||| |||| | ||| || || || ||
Sbjct 4931 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTA 4872
Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217
|||||||||||| |||||| ||||||| |||| || || |||||||| | | ||||
Sbjct 4871 CATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 4812
Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277
||||| | | || || |||| |||||| ||| ||||| |||||||| || |
Sbjct 4811 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGT 4753
Query 22278 CGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC 22337
|||||| | | || | | ||| || ||||| || |||||||| | ||
Sbjct 4752 CGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCT 4693
Query 22338 TGATCTC-TAACGG-TATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAA 22395
||| ||| | | || || || || |||||| || ||||| | ||||||
Sbjct 4692 TGAGCTCATCAGGGATACCGGG--GACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGT 4635
Query 22396 ATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTT 22455
|| || |||| |||||||||| ||| | || | || || || ||||
Sbjct 4634 GTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 4575
Query 22456 CACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTC 22515
|| || || |||||||||| | ||| ||||| ||| |||||||| ||| |||| ||
Sbjct 4574 GACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTC 4515
Query 22516 GAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAG 22575
||| | || ||| || || ||||| ||||| |||||||||||||| || | |
Sbjct 4514 GAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCGCAGAC 4455
Query 22576 TAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAG 22635
|||||||| | | |||||||| | ||| || ||| | | | ||||||||||||
Sbjct 4454 GAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAG 4395
Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692
|| | |||||| || || ||||| ||||| || || | |||| | ||||| ||
Sbjct 4394 GTCCGTCGGCGTGAC---GTTCCACAGGTCGTACTGTAAGAGGCCGTGGCTCGCGGG 4341
>seq5
Length=1227376
Score = 98.7 bits (108), Expect = 9e-16
Identities = 212/311 (68%), Gaps = 12/311 (4%)
Strand=Plus/Minus
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || |||||||||||||||||||| || || || || ||||| | | |||
Sbjct 777780 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTCCTCTTCTCG 777721
Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195
||| | | || || | | | || || | ||| ||| |||||||||||
Sbjct 777720 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATCCGCGAGGCGGTCGA 777662
Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252
|||||| | ||||| ||||||| || || || || || || |||| |||||||
Sbjct 777661 GATCGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGT---CAAGCTCATCGGCATGAACAG 777605
Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACT--TTTGCTCGAACTGATT 58310
||| | |||| ||||||| ||||| || || ||| || | || | || | |
Sbjct 777604 CGATCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCGCTCGGCAA 777545
Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370
|||| || ||| ||| | | || ||||| || |||||| | |||||||| | |||
Sbjct 777544 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 777487
Query 58371 GGCAAGACAAA 58381
|||||||| ||
Sbjct 777486 GGCAAGACCAA 777476
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/162 (72%), Gaps = 8/162 (5%)
Strand=Plus/Minus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970
|||||||| |||||| | ||| ||||| | ||||| || | |||| |||
Sbjct 778040 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 777985
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | || ||||||||||||||||||| || || ||||| || ||| || ||| | ||
Sbjct 777984 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 777925
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
|| ||| | ||||| |||||| |||||||||| || || ||
Sbjct 777924 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 777883
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
||||||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | ||
Sbjct 830523 GGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGA 830582
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || | ||||| ||||||||||| || || ||||| || || ||||| ||
Sbjct 830583 GGACGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 830642
Query 31405 T 31405
|
Sbjct 830643 T 830643
>seq6
Length=1203005
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| ||||
Sbjct 884092 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 884033
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 884032 CGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 883973
Query 31312 GCAGCG 31317
||||||
Sbjct 883972 GCAGCG 883967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766104679760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |