Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25 315 6e-81 seq5 98.7 9e-16 seq6 87.8 2e-12 >seq25 Length=115453 Score = 315 bits (348), Expect = 6e-81 Identities = 515/740 (70%), Gaps = 4/740 (1%) Strand=Plus/Minus Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||||||||||||||| | ||||| ||| || ||| Sbjct 3734 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTACCAG 3675 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | |||| ||| ||| ||| | | || || | ||| ||||| | | ||| | Sbjct 3674 AGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAACAGC 3615 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321 | | || ||| | ||||| ||| |||||||| | | ||| || || | || Sbjct 3614 TCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCA--GGGCAGAAGA 3557 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | ||| || | || || || ||| || || || || ||||| || || Sbjct 3556 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAA 3497 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||||| ||||| ||||| |||||||| |||||| |||||| | || | || | Sbjct 3496 AGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 3437 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| |||| Sbjct 3436 CGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGC 3377 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 ||||||| |||||||| || || |||||||||||||| | ||||| || | || |||| Sbjct 3376 CGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 3317 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || |||| ||| || | ||| || | || || | |||||| | || Sbjct 3316 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGA 3257 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| ||||| ||| ||| || || || | |||||| || || ||||||||||||| Sbjct 3256 GACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGC 3197 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 ||||||| ||| || || ||| ||| | ||| ||||| || | |||| | |||| Sbjct 3196 CCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 3137 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 | |||| ||| || ||||| ||||||||||||||| | | |||||| || |||| Sbjct 3136 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 3077 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 |||| ||||| ||| |||||||| || ||||| || |||| ||||| ||||| | || Sbjct 3076 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCA 3017 Query 23862 TGTATTGAGGTCTCTCGACC 23881 ||| || |||| |||| || Sbjct 3016 TGTGCTGCGGTCGCTCGGCC 2997 Score = 170 bits (188), Expect = 2e-37 Identities = 400/597 (67%), Gaps = 9/597 (2%) Strand=Plus/Minus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 || || || ||| || || |||| |||||| |||| | ||| || || || || Sbjct 4931 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTA 4872 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217 |||||||||||| |||||| ||||||| |||| || || |||||||| | | |||| Sbjct 4871 CATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 4812 Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277 ||||| | | || || |||| |||||| ||| ||||| |||||||| || | Sbjct 4811 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGT 4753 Query 22278 CGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC 22337 |||||| | | || | | ||| || ||||| || |||||||| | || Sbjct 4752 CGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCT 4693 Query 22338 TGATCTC-TAACGG-TATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAA 22395 ||| ||| | | || || || || |||||| || ||||| | |||||| Sbjct 4692 TGAGCTCATCAGGGATACCGGG--GACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGT 4635 Query 22396 ATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTT 22455 || || |||| |||||||||| ||| | || | || || || |||| Sbjct 4634 GTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 4575 Query 22456 CACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTC 22515 || || || |||||||||| | ||| ||||| ||| |||||||| ||| |||| || Sbjct 4574 GACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTC 4515 Query 22516 GAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAG 22575 ||| | || ||| || || ||||| ||||| |||||||||||||| || | | Sbjct 4514 GAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCGCAGAC 4455 Query 22576 TAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAG 22635 |||||||| | | |||||||| | ||| || ||| | | | |||||||||||| Sbjct 4454 GAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAG 4395 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692 || | |||||| || || ||||| ||||| || || | |||| | ||||| || Sbjct 4394 GTCCGTCGGCGTGAC---GTTCCACAGGTCGTACTGTAAGAGGCCGTGGCTCGCGGG 4341 >seq5 Length=1227376 Score = 98.7 bits (108), Expect = 9e-16 Identities = 212/311 (68%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || |||||||||||||||||||| || || || || ||||| | | ||| Sbjct 777780 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTCCTCTTCTCG 777721 Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 ||| | | || || | | | || || | ||| ||| ||||||||||| Sbjct 777720 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATCCGCGAGGCGGTCGA 777662 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252 |||||| | ||||| ||||||| || || || || || || |||| ||||||| Sbjct 777661 GATCGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGT---CAAGCTCATCGGCATGAACAG 777605 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACT--TTTGCTCGAACTGATT 58310 ||| | |||| ||||||| ||||| || || ||| || | || | || | | Sbjct 777604 CGATCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCGCTCGGCAA 777545 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 |||| || ||| ||| | | || ||||| || |||||| | |||||||| | ||| Sbjct 777544 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 777487 Query 58371 GGCAAGACAAA 58381 |||||||| || Sbjct 777486 GGCAAGACCAA 777476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970 |||||||| |||||| | ||| ||||| | ||||| || | |||| ||| Sbjct 778040 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 777985 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | || ||||||||||||||||||| || || ||||| || ||| || ||| | || Sbjct 777984 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 777925 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || ||| | ||||| |||||| |||||||||| || || || Sbjct 777924 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 777883 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | || Sbjct 830523 GGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGA 830582 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || | ||||| ||||||||||| || || ||||| || || ||||| || Sbjct 830583 GGACGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 830642 Query 31405 T 31405 | Sbjct 830643 T 830643 >seq6 Length=1203005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| |||| Sbjct 884092 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 884033 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 884032 CGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 883973 Query 31312 GCAGCG 31317 |||||| Sbjct 883972 GCAGCG 883967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766104679760