Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq25 100 4e-16
seq5 95.1 2e-14
seq10 87.8 3e-12
>seq25
Length=115453
Score = 100 bits (110), Expect = 4e-16
Identities = 287/436 (66%), Gaps = 4/436 (1%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| |||||| || | | ||| | | || |||||| | ||||||| | | ||
Sbjct 3301 ACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGC 3360
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||||||||| || || || ||||| | ||| ||||| | || || |||
Sbjct 3361 TACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGG 3420
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||||| ||| | || || || |||| | ||||| ||| ||| || |||| ||
Sbjct 3421 CACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGC 3480
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046
|| | |||||||| | ||| |||||| | || || | |||||| |||| ||| | |
Sbjct 3481 GCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAG 3540
Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106
||| ||||| ||| | ||||| | | | ||||||| || ||| || |||
Sbjct 3541 AACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGC 3600
Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACGAGT 97165
|| ||||| ||| || | | || ||| | ||||| || | | | || | |
Sbjct 3601 GACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATT 3660
Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224
| || | |||| || ||| | |||||| | ||| ||||| ||||| || | || |
Sbjct 3661 C-CCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCT 3718
Query 97225 ACATTCTCTACAAGGA 97240
||| |||||||||||
Sbjct 3719 TCATGCTCTACAAGGA 3734
>seq5
Length=1227376
Score = 95.1 bits (104), Expect = 2e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|| || || ||||||||||| |||||||||||||| || || || ||| |||||||
Sbjct 777980 CTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTC 777921
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
||||||||||||||||| | ||||||||||| ||
Sbjct 777920 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 777886
>seq10
Length=918868
Score = 87.8 bits (96), Expect = 3e-12
Identities = 214/319 (67%), Gaps = 4/319 (1%)
Strand=Plus/Minus
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506
|||||||||| ||| || ||||||| || | ||| |||||||| | | || || |
Sbjct 58071 CCGTGCGTCAAGTGTCCGCCGTCGGCGAGGTTGAGGCCCATGATGCGGTCCTGGGGCTGG 58012
Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566
| | | ||| | ||||||||||||| ||||||||||||| || || || ||
Sbjct 58011 ATCAACGCGGTGAAGGCGGCAAAGTTGGCGGTCGAGCCCGAGTAAGGCTGGACGTTGACG 57952
Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626
||||| | ||| ||| | | |||||| ||| |||| ||| | | ||||
Sbjct 57951 CCCCACTTGGATCCGTCGAGGTGGAACGCCTCGAGCGCGCGCTTCTGGCACAAGACTTCG 57892
Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTAC 127686
| |||| | ||||| || || ||||| || ||||| |||||||||||||
Sbjct 57891 AGCTCGTCGACGACTTCGTTGCCGCCGTAGTAGCGAGCGCCGGGGAGACCCTCCGAGTAC 57832
Query 127687 TTGTTGATG-AGACACGAACTCAT-GCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCG 127744
|||||| || |||| ||| | | || | | | |||| || | ||| | ||| || |
Sbjct 57831 TTGTTGGTGAAGAC-CGAGCCGTTGGCCTGCATG-ACCGCGAGCGAGGTGAGGTTCTCGG 57774
Query 127745 ATGCGATCAACTCTAAGCC 127763
| ||||||| ||| | |||
Sbjct 57773 ACGCGATCAGCTCGAGGCC 57755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058709048280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |