Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq25 100 4e-16 seq5 95.1 2e-14 seq10 87.8 3e-12 >seq25 Length=115453 Score = 100 bits (110), Expect = 4e-16 Identities = 287/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | | || |||||| | ||||||| | | || Sbjct 3301 ACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGC 3360 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || || || ||||| | ||| ||||| | || || ||| Sbjct 3361 TACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGG 3420 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||| | || || || |||| | ||||| ||| ||| || |||| || Sbjct 3421 CACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGC 3480 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | |||||||| | ||| |||||| | || || | |||||| |||| ||| | | Sbjct 3481 GCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAG 3540 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| ||||| ||| | ||||| | | | ||||||| || ||| || ||| Sbjct 3541 AACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGC 3600 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACGAGT 97165 || ||||| ||| || | | || ||| | ||||| || | | | || | | Sbjct 3601 GACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATT 3660 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | || | |||| || ||| | |||||| | ||| ||||| ||||| || | || | Sbjct 3661 C-CCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCT 3718 Query 97225 ACATTCTCTACAAGGA 97240 ||| ||||||||||| Sbjct 3719 TCATGCTCTACAAGGA 3734 >seq5 Length=1227376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||||||||| |||||||||||||| || || || ||| ||||||| Sbjct 777980 CTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTC 777921 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||||||||| | ||||||||||| || Sbjct 777920 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 777886 >seq10 Length=918868 Score = 87.8 bits (96), Expect = 3e-12 Identities = 214/319 (67%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||||||||| ||| || ||||||| || | ||| |||||||| | | || || | Sbjct 58071 CCGTGCGTCAAGTGTCCGCCGTCGGCGAGGTTGAGGCCCATGATGCGGTCCTGGGGCTGG 58012 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | | | ||| | ||||||||||||| ||||||||||||| || || || || Sbjct 58011 ATCAACGCGGTGAAGGCGGCAAAGTTGGCGGTCGAGCCCGAGTAAGGCTGGACGTTGACG 57952 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| | ||| ||| | | |||||| ||| |||| ||| | | |||| Sbjct 57951 CCCCACTTGGATCCGTCGAGGTGGAACGCCTCGAGCGCGCGCTTCTGGCACAAGACTTCG 57892 Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTAC 127686 | |||| | ||||| || || ||||| || ||||| ||||||||||||| Sbjct 57891 AGCTCGTCGACGACTTCGTTGCCGCCGTAGTAGCGAGCGCCGGGGAGACCCTCCGAGTAC 57832 Query 127687 TTGTTGATG-AGACACGAACTCAT-GCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCG 127744 |||||| || |||| ||| | | || | | | |||| || | ||| | ||| || | Sbjct 57831 TTGTTGGTGAAGAC-CGAGCCGTTGGCCTGCATG-ACCGCGAGCGAGGTGAGGTTCTCGG 57774 Query 127745 ATGCGATCAACTCTAAGCC 127763 | ||||||| ||| | ||| Sbjct 57773 ACGCGATCAGCTCGAGGCC 57755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058709048280