Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq23 145 1e-30 seq17 127 3e-25 >seq23 Length=261288 Score = 145 bits (160), Expect = 1e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 106294 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 106235 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| ||||||| | |||| || |||| |||| || | |||||||||||| Sbjct 106234 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTC 106175 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| | | |||| || | | ||| ||||||||||| || || ||||| |||||| Sbjct 106174 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 106115 Query 16637 TCCATGGATATCGTCTATGC 16656 || | || ||||||| || Sbjct 106114 TCGCTCGACGTCGTCTACGC 106095 >seq17 Length=551157 Score = 127 bits (140), Expect = 3e-25 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| || || Sbjct 342346 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 342405 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 342406 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 342465 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | |||| || | | ||| ||||||||||| || || ||||| ||| Sbjct 342466 CTCGAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTC 342525 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 342526 ACCTCGCTCGACGTCGTCTACGC 342548 Score = 127 bits (140), Expect = 3e-25 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| || || Sbjct 358883 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 358824 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 358823 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 358764 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | |||| || | | ||| ||||||||||| || || ||||| ||| Sbjct 358763 CTCGAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTC 358704 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 358703 ACCTCGCTCGACGTCGTCTACGC 358681 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| || || Sbjct 398281 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 398222 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 398221 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 398162 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | || | || | || || ||||||||||| || || ||||| ||| Sbjct 398161 CTCGAGAACATCATTCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 398102 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 398101 ACCTCGCTCGACGTCGTCTACGC 398079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075151541729