Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq25 228 2e-54 >seq25 Length=115453 Score = 228 bits (252), Expect = 2e-54 Identities = 500/740 (68%), Gaps = 12/740 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | |||||||| || | || ||||| || || |||| Sbjct 3001 GAGCGACCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAG 3060 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 |||||| || || || || || | | || ||| || ||||||||| |||| || Sbjct 3061 CGCGCGATCGAGACGTACAACCTCATGTCGGAGCG-GTACTTTACGCACGCCTCGCCGAC 3119 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || || || | | || ||| | || || ||||| || | | ||||| Sbjct 3120 GCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAA 3179 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| || |||||||| |||| ||||| || |||| || || || || ||||||| Sbjct 3180 GGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGAC 3239 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745 || ||||| || ||| | ||||||||||| | || || || | || |||| || Sbjct 3240 GGCCGGCGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGT-ACATCGCCG 3298 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 |||| || |||||||| || | | |||||||| || |||| |||| || ||| Sbjct 3299 GCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGC 3358 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | |||||||||||||| || |||||| || ||||| || || || |||||||| Sbjct 3359 GCTACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGT 3418 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || ||||| || || ||||| || || ||||| || ||| || || ||||| | | Sbjct 3419 GGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCC 3478 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || || || |||||| ||| || ||| || | |||| || ||| |||| || || | Sbjct 3479 GCGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGA-G 3537 Query 363986 CAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 ||| | | ||| | ||||| ||||| ||| || || || ||| || | Sbjct 3538 CAGAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTAC 3597 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG--- 364101 || ||||| | | || | ||| |||||||| |||||| || ||| Sbjct 3598 GGCGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGC---CAAGCGC 3654 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || |||||||| |||||||| |||| |||||| | || | ||| | ||||| || | Sbjct 3655 ACCATTCCCGCCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAAC 3714 Query 364162 CCCTATATGTTGTACAAAGA 364181 |||| ||| | ||||| || Sbjct 3715 CCCTTCATGCTCTACAAGGA 3734 Score = 107 bits (118), Expect = 5e-18 Identities = 290/439 (66%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 364721 AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGA 364780 |||| || | |||||||| ||||| || || ||||| || || || ||| |||| Sbjct 4432 AGCACGGCATCCGCAACTCGCTCGTCTGCGCACCGATGCCGACCGCGTCGACTAGCCAGA 4491 Query 364781 TCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTC 364840 ||||||| ||||||| ||||| |||| || ||| | || | ||||| || | Sbjct 4492 TCCTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGTGTCC 4551 Query 364841 TTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGC 364900 | |||| || || | ||| || || | || || || || ||||||||| | Sbjct 4552 TCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCC 4611 Query 364901 TGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC 364960 ||||| ||| ||||||||| |||||||| || || || | |||||| | | Sbjct 4612 TGTGGAACGACGCGATGAAGAACACGATCATCGCGCACAACGGCTCGATCCAGAACGTCC 4671 Query 364961 CAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGA 365019 | || | || || || || |||| || ||||| || || ||||| || || || || Sbjct 4672 CCGGTATCCCTGATGAGCTCAAGCGCATCTACAAGACGGTGTGGGAGATCTCGCA---GA 4728 Query 365020 A-CTC-TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | || |||| || | | ||||| ||||| || || ||| ||| |||||| | | Sbjct 4729 AGGTCGTCATCGACCTCTCCGCCGACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTCA 4788 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 |||| | | | ||| ||| || |||| || || ||||| |||||||| |||| Sbjct 4789 ACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGA 4848 Query 365138 AATCCGGTCTTAAGACAGG 365156 | ||||| ||||| || Sbjct 4849 AGAAGGGTCTCAAGACGGG 4867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352714941446