Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq25 122 8e-23
seq6 118 1e-21
seq5 118 1e-21
seq17 104 2e-17
seq15 89.7 5e-13
>seq25
Length=115453
Score = 122 bits (134), Expect = 8e-23
Identities = 498/765 (65%), Gaps = 29/765 (4%)
Strand=Plus/Minus
Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795
|||||| |||||||||||||||||| | || ||| ||||| ||||| | ||| | |
Sbjct 3746 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 3687
Query 145796 ATAAAACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCG 145852
|| || || || | ||| || | | ||| ||| | ||| ||||| | ||
Sbjct 3686 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 3630
Query 145853 TATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTG 145912
|| ||| | | ||||||| ||| || |||||| ||| |||||||| || |
Sbjct 3629 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 3570
Query 145913 TTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGC 145972
|| || | || | ||| ||||||| | ||| |||||||| || | || ||
Sbjct 3569 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 3510
Query 145973 ACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTT 146031
| ||| || || | | |||||||||||| | ||||| || ||| | ||
Sbjct 3509 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 3450
Query 146032 CAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC 146091
| | || | | ||||||| ||||||||||| || | |||| ||||| || ||
Sbjct 3449 AGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCC 3391
Query 146092 TTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCAT 146148
|| ||| || |||||||| |||| || | ||||||| | ||||| | |||
Sbjct 3390 CGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCAT 3331
Query 146149 GGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCAC 146208
||| || |||| | | ||||||||| | || | |||| | ||| |
Sbjct 3330 GGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGAT 3271
Query 146209 GCAATGAACATTCACGCCGAGACCGCCG-CCGTACTTGGATAT-AGCGGCGCA-GTCGCC 146265
| || | | |||| |||||| |||| |||||| || |||| |||| |||
Sbjct 3270 GTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCG-CGCACGTCTT- 3214
Query 146266 GAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAG 146323
|||||| ||||||||||| || || ||| |||| || || || ||||||||
Sbjct 3213 GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGAC 3156
Query 146324 CACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATT 146383
| | ||||| |||||| || || ||| | |||||| |||||||||||
Sbjct 3155 GAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAA---- 3100
Query 146384 TTTCGGCT----CATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAAT 146439
| | ||| ||| | ||||| ||||| ||| | |||||||||||| || ||
Sbjct 3099 GTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGAT 3040
Query 146440 GCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484
||| | ||||| |||||||||||||| || || ||||| |||||
Sbjct 3039 GCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCAC 2995
Score = 95.1 bits (104), Expect = 1e-14
Identities = 165/238 (69%), Gaps = 4/238 (2%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||||||||| ||||||||||| | ||||| || || | ||| |||||| | ||
Sbjct 4576 TTGACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGC 4517
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCAT--GTACGCCA 145175
|| || | |||||| ||| ||||| || |||| ||||| ||||| || |||
Sbjct 4516 TCGAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCGC-- 4459
Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235
| | || ||||| | |||||||| | || | ||||| | | |||| ||||
Sbjct 4458 AGACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCC 4399
Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293
| || |||||| | |||| ||||| ||||||||| || | ||| | ||| |||||
Sbjct 4398 ACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGTAAGAGGCCGTGGCTCGCGGG 4341
>seq6
Length=1203005
Score = 118 bits (130), Expect = 1e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||||||||| | || || | || | |||||| |||||||| ||||||||||| |
Sbjct 882649 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGAC 882708
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || ||| |||| || ||||||||||| ||||||
Sbjct 882709 AAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 882768
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 882769 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTCAACC 882828
Query 131188 TCGACGGT 131195
|||| |||
Sbjct 882829 TCGAGGGT 882836
>seq5
Length=1227376
Score = 118 bits (130), Expect = 1e-21
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||| | ||| ||||| | || | ||||||||||| |||||||| || |||||
Sbjct 830658 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 830599
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||
Sbjct 830598 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 830539
Query 131127 GATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 830538 AATGCCCTCCTTGTC 830524
Score = 105 bits (116), Expect = 6e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| ||||| || || | ||||||||||| ||||| ||||| ||
Sbjct 829494 CCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAA 829435
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||
Sbjct 829434 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 829375
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || || | |||||||
Sbjct 829374 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGACGACTCGACC 829315
Query 131188 TCGACGGT 131195
|||| |||
Sbjct 829314 TCGAGGGT 829307
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||||||||| | || | |||||||| || || |||||||||||
Sbjct 829184 CCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAA 829125
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| |||||||| || ||| |||| | |||||||||||| ||||||
Sbjct 829124 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 829065
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 829064 ATGCCCTCCTTGTC 829051
>seq17
Length=551157
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || | || | |||||||||||| || |||||||| ||
Sbjct 51375 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 51316
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || |||
Sbjct 51315 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 51256
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
|| || || ||||| ||| || ||||| |||
Sbjct 51255 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 51221
>seq15
Length=767120
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
|||||||||||| ||||||||||| || | ||||| |||||| |||||||||||
Sbjct 225808 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 225867
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
|| |||| | ||||||||||| || ||||| || || ||||| ||| || |||
Sbjct 225868 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 225927
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195
|| | || | || || | ||||||| |||| |||
Sbjct 225928 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 225966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012487291520
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