Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq25 122 8e-23 seq6 118 1e-21 seq5 118 1e-21 seq17 104 2e-17 seq15 89.7 5e-13 >seq25 Length=115453 Score = 122 bits (134), Expect = 8e-23 Identities = 498/765 (65%), Gaps = 29/765 (4%) Strand=Plus/Minus Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||| |||||||||||||||||| | || ||| ||||| ||||| | ||| | | Sbjct 3746 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 3687 Query 145796 ATAAAACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCG 145852 || || || || | ||| || | | ||| ||| | ||| ||||| | || Sbjct 3686 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 3630 Query 145853 TATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTG 145912 || ||| | | ||||||| ||| || |||||| ||| |||||||| || | Sbjct 3629 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 3570 Query 145913 TTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGC 145972 || || | || | ||| ||||||| | ||| |||||||| || | || || Sbjct 3569 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 3510 Query 145973 ACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTT 146031 | ||| || || | | |||||||||||| | ||||| || ||| | || Sbjct 3509 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 3450 Query 146032 CAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC 146091 | | || | | ||||||| ||||||||||| || | |||| ||||| || || Sbjct 3449 AGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCC 3391 Query 146092 TTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCAT 146148 || ||| || |||||||| |||| || | ||||||| | ||||| | ||| Sbjct 3390 CGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCAT 3331 Query 146149 GGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCAC 146208 ||| || |||| | | ||||||||| | || | |||| | ||| | Sbjct 3330 GGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGAT 3271 Query 146209 GCAATGAACATTCACGCCGAGACCGCCG-CCGTACTTGGATAT-AGCGGCGCA-GTCGCC 146265 | || | | |||| |||||| |||| |||||| || |||| |||| ||| Sbjct 3270 GTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCG-CGCACGTCTT- 3214 Query 146266 GAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAG 146323 |||||| ||||||||||| || || ||| |||| || || || |||||||| Sbjct 3213 GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGAC 3156 Query 146324 CACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATT 146383 | | ||||| |||||| || || ||| | |||||| ||||||||||| Sbjct 3155 GAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAA---- 3100 Query 146384 TTTCGGCT----CATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAAT 146439 | | ||| ||| | ||||| ||||| ||| | |||||||||||| || || Sbjct 3099 GTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGAT 3040 Query 146440 GCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 ||| | ||||| |||||||||||||| || || ||||| ||||| Sbjct 3039 GCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCAC 2995 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||||||||| | ||||| || || | ||| |||||| | || Sbjct 4576 TTGACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGC 4517 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCAT--GTACGCCA 145175 || || | |||||| ||| ||||| || |||| ||||| ||||| || ||| Sbjct 4516 TCGAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCGC-- 4459 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | || ||||| | |||||||| | || | ||||| | | |||| |||| Sbjct 4458 AGACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCC 4399 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 | || |||||| | |||| ||||| ||||||||| || | ||| | ||| ||||| Sbjct 4398 ACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGTAAGAGGCCGTGGCTCGCGGG 4341 >seq6 Length=1203005 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| | || || | || | |||||| |||||||| ||||||||||| | Sbjct 882649 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATCCGAC 882708 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| || ||||||||||| |||||| Sbjct 882709 AAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 882768 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 882769 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTCAACC 882828 Query 131188 TCGACGGT 131195 |||| ||| Sbjct 882829 TCGAGGGT 882836 >seq5 Length=1227376 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| ||||| | || | ||||||||||| |||||||| || ||||| Sbjct 830658 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 830599 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 830598 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 830539 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 830538 AATGCCCTCCTTGTC 830524 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| || || | ||||||||||| ||||| ||||| || Sbjct 829494 CCACCGCGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATATTGTAGTCCGAA 829435 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 829434 AGCGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 829375 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 829374 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGACGACTCGACC 829315 Query 131188 TCGACGGT 131195 |||| ||| Sbjct 829314 TCGAGGGT 829307 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | |||||||| || || ||||||||||| Sbjct 829184 CCTCCGCGGAGACGCAGCACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCCGAA 829125 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 829124 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 829065 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 829064 ATGCCCTCCTTGTC 829051 >seq17 Length=551157 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | |||||||||||| || |||||||| || Sbjct 51375 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 51316 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 51315 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 51256 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 51255 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 51221 >seq15 Length=767120 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| ||||||||||| || | ||||| |||||| ||||||||||| Sbjct 225808 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 225867 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 225868 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 225927 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 225928 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 225966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012487291520