Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq17 120 6e-22 seq16 114 3e-20 seq7 114 3e-20 seq11 113 9e-20 seq1 105 1e-17 seq8 98.7 2e-15 seq3 96.9 7e-15 seq25 95.1 2e-14 seq21 86.0 1e-11 >seq17 Length=551157 Score = 120 bits (132), Expect = 6e-22 Identities = 86/97 (89%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 412061 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 412120 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCG 142599 |||||||| |||| || |||| | ||||| ||||| Sbjct 412121 CCCCACATTGGGC-GACTTCGC--TTTTTTGCTGGCG 412154 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 346762 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 346821 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 346822 CCCCACATTGGGC 346834 Score = 114 bits (126), Expect = 3e-20 Identities = 85/97 (88%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 360999 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 360940 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCGC 142600 ||||||| |||| || |||| | ||||| || ||| Sbjct 360939 CCCACATTGGGC-GACTTCGC--TTTTTTGCTGTCGC 360906 Score = 114 bits (126), Expect = 3e-20 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545 ||||| |||| | | |||||||||||||||||||||||||| | ||||||||||||| Sbjct 399043 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 398984 Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||||||||||| |||| Sbjct 398983 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 398954 >seq16 Length=742613 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 525907 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 525848 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 525847 CCCCACATTGGGC 525835 >seq7 Length=1146271 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 124900 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 124959 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 124960 CCCCACATTGGGC 124972 >seq11 Length=913747 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 494052 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494111 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 494112 CCCACATTGGGC 494123 >seq1 Length=1516062 Score = 105 bits (116), Expect = 1e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 || || || ||||| ||||||||||||||||| || || | |||||||| || || || Sbjct 78501 GGCTCGCTCTCGGGCGGTTGGAAGATGAAGCTCGCGCTTGCCCGCGCCATCCT-CTTCGA 78443 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| ||||||||| ||||| |||||| ||||| Sbjct 78442 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 78383 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | | ||| |||| ||||| |||||| Sbjct 78382 GCTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACGTCCATCATCGTCTCGCACGACAG 78323 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 |||||||| | ||| ||| | | |||| | ||| Sbjct 78322 CGGCTTCCTCAACAACGTCTGCACCGACATCCTCCAC 78286 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | ||||| || ||| | || ||||| || || |||| |||| | ||||||| Sbjct 77941 GTCCTCGGACCGAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCGTCGCCGAGACC 77882 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| |||||| || || | |||||||| Sbjct 77881 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 77822 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| ||| || ||| ||||| Sbjct 77821 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACGCCGCTCCAGTACAT 77766 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738 ||||| || |||||||| || || ||| | || || |||||||| || ||||| ||||| Sbjct 77416 GGTCTCGAGCCCGAGTTCACCACCCACAACACG-ATGCGCGGTCTCTCGGGAGGACAGAA 77358 Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 |||||| | ||| ||| || || |||| | ||||||||| || | |||||||| Sbjct 77357 GGTCAAGGTCGTCCTCGCCGCCGCCACCTGGCGCCGCCCTCACGTCGTCATCCTCGACGA 77298 Query 280799 GCCTACCAACTA 280810 ||| |||||||| Sbjct 77297 GCCGACCAACTA 77286 >seq8 Length=1023559 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||||||||| ||||||||||| || |||| || | | ||||| ||| Sbjct 35098 TGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 35157 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | || ||| ||||||| ||||| || ||||| |||||||| ||| Sbjct 35158 GTCGTCGGTCGCGACAACTACGGTGTCTTCCCGCTCCGCGGAAAGCTCCTCAACGTTCGC 35217 Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014 || || | | ||| || | || | || || ||||| || |||||||| ||| Sbjct 35218 GAGGCAACCG--GCAAGGCGCTTCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCA 35275 Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACA 218041 |||| | ||| || ||||| |||| Sbjct 35276 TGGGCTTGCAGCAGGGCAAGACGTACA 35302 >seq3 Length=1317834 Score = 96.9 bits (106), Expect = 7e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 176606 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTCCCC 176547 Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 ||| ||| ||| |||||| || ||| | || || ||||||||||| |||||||| Sbjct 176546 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGTATCGCTTACGTCGCCCAGCACGC 176488 Query 280298 TTTCCACCACATCGAGAACCACCTGGA 280324 ||||||||||||||| | ||||| || Sbjct 176487 CTTCCACCACATCGAGCAGCACCTCGA 176461 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| | ||||||| ||||| ||||| Sbjct 175992 ATGCGCGGTCTCTCGGGTGGTCAGAAGGTCAAGGTCGTCATCGCCGCAGCCATGTGGTCC 175933 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 | || || || |||| ||||||||||| ||||||| | |||||||||| Sbjct 175932 AAGCCGCAGGTCCTCGTCCTCGACGAGCCGACCAACTTTTTGGACCGCGA 175883 >seq25 Length=115453 Score = 95.1 bits (104), Expect = 2e-14 Identities = 262/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091 || || |||||||||||||| ||||||| |||| || || | | || || || Sbjct 4864 GTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 4805 Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | | ||| | ||| | ||||| ||| |||| || || || || || || | | Sbjct 4804 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAG 4745 Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210 ||||| || || |||| |||||||||||| |||||||| | ||| ||||| || Sbjct 4744 AGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGA-TGCGCTTGAGCTC 4686 Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270 | | | || || || |||||||| || || || || || ||| ||||||||| Sbjct 4685 ATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 4626 Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330 | ||| ||| || || | | ||| ||||||| || | | |||||| || | Sbjct 4625 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 4566 Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTC 293390 |||||| || ||||| || ||| |||| ||||| || ||| || ||| ||||| Sbjct 4565 GAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 4506 Query 293391 AACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCAT 293429 | ||| ||||| ||| || ||||| ||||| Sbjct 4505 GTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCAT 4467 >seq21 Length=276254 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| |||| Sbjct 32082 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 32141 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | | || || || || | | ||||| || || ||||| | ||||||| ||| || Sbjct 32142 GTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 32201 Query 251697 TTCAGAGTTCATGCCAATCA 251716 | ||||||||| |||| Sbjct 32202 GGTGGCGTTCATGCCGATCA 32221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836102034573