Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq17 120 6e-22
seq16 114 3e-20
seq7 114 3e-20
seq11 113 9e-20
seq1 105 1e-17
seq8 98.7 2e-15
seq3 96.9 7e-15
seq25 95.1 2e-14
seq21 86.0 1e-11
>seq17
Length=551157
Score = 120 bits (132), Expect = 6e-22
Identities = 86/97 (89%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 412061 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 412120
Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCG 142599
|||||||| |||| || |||| | ||||| |||||
Sbjct 412121 CCCCACATTGGGC-GACTTCGC--TTTTTTGCTGGCG 412154
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 346762 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 346821
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 346822 CCCCACATTGGGC 346834
Score = 114 bits (126), Expect = 3e-20
Identities = 85/97 (88%), Gaps = 3/97 (3%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 360999 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 360940
Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCGC 142600
||||||| |||| || |||| | ||||| || |||
Sbjct 360939 CCCACATTGGGC-GACTTCGC--TTTTTTGCTGTCGC 360906
Score = 114 bits (126), Expect = 3e-20
Identities = 80/90 (89%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545
||||| |||| | | |||||||||||||||||||||||||| | |||||||||||||
Sbjct 399043 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 398984
Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575
||||||||||||||||||||||||| ||||
Sbjct 398983 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 398954
>seq16
Length=742613
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 525907 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 525848
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 525847 CCCCACATTGGGC 525835
>seq7
Length=1146271
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 124900 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 124959
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 124960 CCCCACATTGGGC 124972
>seq11
Length=913747
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 494052 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494111
Query 142564 CCCACATCGGGC 142575
||||||| ||||
Sbjct 494112 CCCACATTGGGC 494123
>seq1
Length=1516062
Score = 105 bits (116), Expect = 1e-17
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757
|| || || ||||| ||||||||||||||||| || || | |||||||| || || ||
Sbjct 78501 GGCTCGCTCTCGGGCGGTTGGAAGATGAAGCTCGCGCTTGCCCGCGCCATCCT-CTTCGA 78443
Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817
||||| |||| || || || ||||| ||||||||| ||||| |||||| |||||
Sbjct 78442 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 78383
Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
||| | | |||||| | || |||| | | ||| |||| ||||| ||||||
Sbjct 78382 GCTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACGTCCATCATCGTCTCGCACGACAG 78323
Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914
|||||||| | ||| ||| | | |||| | |||
Sbjct 78322 CGGCTTCCTCAACAACGTCTGCACCGACATCCTCCAC 78286
Score = 95.1 bits (104), Expect = 2e-14
Identities = 128/176 (73%), Gaps = 3/176 (2%)
Strand=Plus/Minus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | ||||| || ||| | || ||||| || || |||| |||| | |||||||
Sbjct 77941 GTCCTCGGACCGAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCGTCGCCGAGACC 77882
Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
|| ||| |||| || | | |||||||| |||||| || || | ||||||||
Sbjct 77881 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 77822
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345
|||||||| |||||||||||||| ||||||| |||| ||| || ||| |||||
Sbjct 77821 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACGCCGCTCCAGTACAT 77766
Score = 87.8 bits (96), Expect = 4e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738
||||| || |||||||| || || ||| | || || |||||||| || ||||| |||||
Sbjct 77416 GGTCTCGAGCCCGAGTTCACCACCCACAACACG-ATGCGCGGTCTCTCGGGAGGACAGAA 77358
Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798
|||||| | ||| ||| || || |||| | ||||||||| || | ||||||||
Sbjct 77357 GGTCAAGGTCGTCCTCGCCGCCGCCACCTGGCGCCGCCCTCACGTCGTCATCCTCGACGA 77298
Query 280799 GCCTACCAACTA 280810
||| ||||||||
Sbjct 77297 GCCGACCAACTA 77286
>seq8
Length=1023559
Score = 98.7 bits (108), Expect = 2e-15
Identities = 148/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| ||||||||||| ||||||||||| || |||| || | | ||||| |||
Sbjct 35098 TGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 35157
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | || ||| ||||||| ||||| || ||||| |||||||| |||
Sbjct 35158 GTCGTCGGTCGCGACAACTACGGTGTCTTCCCGCTCCGCGGAAAGCTCCTCAACGTTCGC 35217
Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014
|| || | | ||| || | || | || || ||||| || |||||||| |||
Sbjct 35218 GAGGCAACCG--GCAAGGCGCTTCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCA 35275
Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACA 218041
|||| | ||| || ||||| ||||
Sbjct 35276 TGGGCTTGCAGCAGGGCAAGACGTACA 35302
>seq3
Length=1317834
Score = 96.9 bits (106), Expect = 7e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| || || || ||||| ||||| ||| | ||||| | ||||||||||||| | ||
Sbjct 176606 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTCCCC 176547
Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297
||| ||| ||| |||||| || ||| | || || ||||||||||| ||||||||
Sbjct 176546 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGTATCGCTTACGTCGCCCAGCACGC 176488
Query 280298 TTTCCACCACATCGAGAACCACCTGGA 280324
||||||||||||||| | ||||| ||
Sbjct 176487 CTTCCACCACATCGAGCAGCACCTCGA 176461
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772
|| |||||||| || || || ||||||||||| | ||||||| ||||| |||||
Sbjct 175992 ATGCGCGGTCTCTCGGGTGGTCAGAAGGTCAAGGTCGTCATCGCCGCAGCCATGTGGTCC 175933
Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
| || || || |||| ||||||||||| ||||||| | ||||||||||
Sbjct 175932 AAGCCGCAGGTCCTCGTCCTCGACGAGCCGACCAACTTTTTGGACCGCGA 175883
>seq25
Length=115453
Score = 95.1 bits (104), Expect = 2e-14
Identities = 262/399 (66%), Gaps = 2/399 (1%)
Strand=Plus/Minus
Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091
|| || |||||||||||||| ||||||| |||| || || | | || || ||
Sbjct 4864 GTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 4805
Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151
| | ||| | ||| | ||||| ||| |||| || || || || || || | |
Sbjct 4804 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAG 4745
Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210
||||| || || |||| |||||||||||| |||||||| | ||| ||||| ||
Sbjct 4744 AGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGA-TGCGCTTGAGCTC 4686
Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270
| | | || || || |||||||| || || || || || ||| |||||||||
Sbjct 4685 ATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 4626
Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330
| ||| ||| || || | | ||| ||||||| || | | |||||| || |
Sbjct 4625 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 4566
Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTC 293390
|||||| || ||||| || ||| |||| ||||| || ||| || ||| |||||
Sbjct 4565 GAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 4506
Query 293391 AACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCAT 293429
| ||| ||||| ||| || ||||| |||||
Sbjct 4505 GTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCAT 4467
>seq21
Length=276254
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636
||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| ||||
Sbjct 32082 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 32141
Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696
| | || || || || | | ||||| || || ||||| | ||||||| ||| ||
Sbjct 32142 GTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 32201
Query 251697 TTCAGAGTTCATGCCAATCA 251716
| ||||||||| ||||
Sbjct 32202 GGTGGCGTTCATGCCGATCA 32221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836102034573
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |