Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25 141 2e-28 seq5 127 4e-24 seq1 125 1e-23 seq6 116 7e-21 seq17 98.7 2e-15 seq16 98.7 2e-15 seq11 98.7 2e-15 seq7 98.7 2e-15 seq21 96.9 6e-15 >seq25 Length=115453 Score = 141 bits (156), Expect = 2e-28 Identities = 282/418 (67%), Gaps = 0/418 (0%) Strand=Plus/Minus Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883 ||| ||||| ||||||||||||||||||||| | ||||| |||| || | | Sbjct 4877 GTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTG 4818 Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943 | ||| | |||| | | | || ||| | ||| | |||||| | |||| || Sbjct 4817 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCC 4758 Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003 |||||| || | ||||| |||||| |||| || | |||||| | ||||||||||| Sbjct 4757 GCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGAT 4698 Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063 |||||||||| |||| || ||| ||||| || || || || || || Sbjct 4697 GCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 4638 Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123 | ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| || Sbjct 4637 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 4578 Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183 |||||| || ||||||| || || ||| |||||| |||| | || || ||| ||| Sbjct 4577 GTTGACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGG 4518 Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241 ||| | ||||| | | ||| ||| || || || ||||| |||||| | ||| Sbjct 4517 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCG 4460 >seq5 Length=1227376 Score = 127 bits (140), Expect = 4e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| | Sbjct 830657 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 830598 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | |||||| |||||||| || | | || ||||| || ||| Sbjct 830597 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 830538 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 830537 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 830478 >seq1 Length=1516062 Score = 125 bits (138), Expect = 1e-23 Identities = 371/561 (66%), Gaps = 32/561 (6%) Strand=Plus/Plus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507 |||||||| |||||| || || |||||||||| || || | | || ||||| Sbjct 78314 AGGAAGCCGCTGTCGTGCGAGACGATGATGGACGTGCAAGT-CTTGAGCGAGCAGAGGTA 78372 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | |||||| || |||||| ||||||| |||||| || || ||||| || || || Sbjct 78373 GTTCTCGAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAG 78432 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 |||||| || || | |||||||||||| | || | |||||||| ||||| || || || Sbjct 78433 GATGTCGGCCTCGAAGAGGATGGCGCGGGCAAGCGCGAGCTTCATCTTCCAACCGCCCGA 78492 Query 225628 CAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAG 225681 || |||||||| | | | | || ||| |||||| |||| |||| Sbjct 78493 GAGCGAGCCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA- 78548 Query 225682 CGTCTGGATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736 ||| | | | || || ||| | |||| | | ||| || || ||||| Sbjct 78549 CGTTGCGGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAG 78604 Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACAC 225795 | | || || | ||||| | | ||| ||| | |||||| || ||||| | Sbjct 78605 ATG-------ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAA 78654 Query 225796 CGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAG 225855 ||| |||| || | |||||||||||| | |||||| || | ||||| || | Sbjct 78655 CGTGCGGACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGGCCGTTGTCGATCGCGCGCAT 78714 Query 225856 CAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGAT 225915 ||||| |||||| | |||||| | || ||| ||||| | | || ||||||| Sbjct 78715 GAGGGTCGACTTGCCGGACCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 78774 Query 225916 GTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATC 225975 | |||| | | ||| |||||||||||| | || || || || |||||| ||| | Sbjct 78775 GCGGAGGGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTT 78834 Query 225976 GCACAGGTCCTCACCCTCCTC 225996 |||||||||||| |||||||| Sbjct 78835 GCACAGGTCCTCGCCCTCCTC 78855 >seq6 Length=1203005 Score = 116 bits (128), Expect = 7e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || |||||||| || ||||| |||||||| |||||||| |||||||| ||||| ||| Sbjct 883970 TGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTG 884029 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || || || | ||||||||| || || ||||||||||||||||| |||||| Sbjct 884030 TCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGC 884089 Query 68460 AT 68461 || Sbjct 884090 AT 884091 Score = 113 bits (124), Expect = 8e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 ||| || ||||| | | ||| || | ||| || || || || ||||||||||| ||||| Sbjct 882645 ATTCCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATC 882704 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 || | || | || || || | ||||||||| ||||| || | | || |||||||| Sbjct 882705 CGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 882764 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 || ||||| |||||||| || ||||| ||||||||| || || ||||| | || || Sbjct 882765 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTC 882824 Query 68411 TACTTCCAAGGTGAT 68425 || || | |||||| Sbjct 882825 AACCTCGAGGGTGAT 882839 >seq17 Length=551157 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 346763 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 346822 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 346823 CCCACATTGGGC 346834 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 360999 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 360940 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 360939 CCCACATTGGGC 360928 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 399025 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 398966 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 398965 CCCACATTGGGC 398954 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 412062 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 412121 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 412122 CCCACATTGGGC 412133 >seq16 Length=742613 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 525906 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 525847 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 525846 CCCACATTGGGC 525835 >seq11 Length=913747 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 494052 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494111 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 494112 CCCACATTGGGC 494123 >seq7 Length=1146271 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 124901 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 124960 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 124961 CCCACATTGGGC 124972 >seq21 Length=276254 Score = 96.9 bits (106), Expect = 6e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | |||||| ||||| || ||||||||||| || Sbjct 32077 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 32136 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098 ||||| || ||||| || | || ||| ||||| || ||||||||||||||||| | Sbjct 32137 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 32194 Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 ||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || | Sbjct 32195 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 32254 Query 10159 TTTCGTTGGCGACCGCTTC 10177 ||| | |||| ||||| Sbjct 32255 GCTCGATCTCGACGGCTTC 32273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621789425160