Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq25 141 2e-28
seq5 127 4e-24
seq1 125 1e-23
seq6 116 7e-21
seq17 98.7 2e-15
seq16 98.7 2e-15
seq11 98.7 2e-15
seq7 98.7 2e-15
seq21 96.9 6e-15
>seq25
Length=115453
Score = 141 bits (156), Expect = 2e-28
Identities = 282/418 (67%), Gaps = 0/418 (0%)
Strand=Plus/Minus
Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883
||| ||||| ||||||||||||||||||||| | ||||| |||| || | |
Sbjct 4877 GTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTG 4818
Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943
| ||| | |||| | | | || ||| | ||| | |||||| | |||| ||
Sbjct 4817 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCC 4758
Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003
|||||| || | ||||| |||||| |||| || | |||||| | |||||||||||
Sbjct 4757 GCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGAT 4698
Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063
|||||||||| |||| || ||| ||||| || || || || || ||
Sbjct 4697 GCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 4638
Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123
| ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| ||
Sbjct 4637 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 4578
Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183
|||||| || ||||||| || || ||| |||||| |||| | || || ||| |||
Sbjct 4577 GTTGACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGG 4518
Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241
||| | ||||| | | ||| ||| || || || ||||| |||||| | |||
Sbjct 4517 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCG 4460
>seq5
Length=1227376
Score = 127 bits (140), Expect = 4e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| |
Sbjct 830657 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 830598
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||| || || | |||||| |||||||| || | | || ||||| || |||
Sbjct 830597 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 830538
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||||||||| ||||||||||| | || || |||
Sbjct 830537 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 830478
>seq1
Length=1516062
Score = 125 bits (138), Expect = 1e-23
Identities = 371/561 (66%), Gaps = 32/561 (6%)
Strand=Plus/Plus
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507
|||||||| |||||| || || |||||||||| || || | | || |||||
Sbjct 78314 AGGAAGCCGCTGTCGTGCGAGACGATGATGGACGTGCAAGT-CTTGAGCGAGCAGAGGTA 78372
Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567
| |||||| || |||||| ||||||| |||||| || || ||||| || || ||
Sbjct 78373 GTTCTCGAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAG 78432
Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627
|||||| || || | |||||||||||| | || | |||||||| ||||| || || ||
Sbjct 78433 GATGTCGGCCTCGAAGAGGATGGCGCGGGCAAGCGCGAGCTTCATCTTCCAACCGCCCGA 78492
Query 225628 CAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAG 225681
|| |||||||| | | | | || ||| |||||| |||| ||||
Sbjct 78493 GAGCGAGCCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA- 78548
Query 225682 CGTCTGGATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736
||| | | | || || ||| | |||| | | ||| || || |||||
Sbjct 78549 CGTTGCGGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAG 78604
Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACAC 225795
| | || || | ||||| | | ||| ||| | |||||| || ||||| |
Sbjct 78605 ATG-------ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAA 78654
Query 225796 CGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAG 225855
||| |||| || | |||||||||||| | |||||| || | ||||| || |
Sbjct 78655 CGTGCGGACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGGCCGTTGTCGATCGCGCGCAT 78714
Query 225856 CAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGAT 225915
||||| |||||| | |||||| | || ||| ||||| | | || |||||||
Sbjct 78715 GAGGGTCGACTTGCCGGACCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 78774
Query 225916 GTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATC 225975
| |||| | | ||| |||||||||||| | || || || || |||||| ||| |
Sbjct 78775 GCGGAGGGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTT 78834
Query 225976 GCACAGGTCCTCACCCTCCTC 225996
|||||||||||| ||||||||
Sbjct 78835 GCACAGGTCCTCGCCCTCCTC 78855
>seq6
Length=1203005
Score = 116 bits (128), Expect = 7e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
|| |||||||| || ||||| |||||||| |||||||| |||||||| ||||| |||
Sbjct 883970 TGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTG 884029
Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|| | || || || || | ||||||||| || || ||||||||||||||||| ||||||
Sbjct 884030 TCGGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGC 884089
Query 68460 AT 68461
||
Sbjct 884090 AT 884091
Score = 113 bits (124), Expect = 8e-20
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290
||| || ||||| | | ||| || | ||| || || || || ||||||||||| |||||
Sbjct 882645 ATTCCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGGATGTTGTAATC 882704
Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350
|| | || | || || || | ||||||||| ||||| || | | || ||||||||
Sbjct 882705 CGACAAGGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 882764
Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410
|| ||||| |||||||| || ||||| ||||||||| || || ||||| | || ||
Sbjct 882765 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGACGACTC 882824
Query 68411 TACTTCCAAGGTGAT 68425
|| || | ||||||
Sbjct 882825 AACCTCGAGGGTGAT 882839
>seq17
Length=551157
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 346763 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 346822
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 346823 CCCACATTGGGC 346834
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 360999 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 360940
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 360939 CCCACATTGGGC 360928
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 399025 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 398966
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 398965 CCCACATTGGGC 398954
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 412062 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 412121
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 412122 CCCACATTGGGC 412133
>seq16
Length=742613
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 525906 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 525847
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 525846 CCCACATTGGGC 525835
>seq11
Length=913747
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 494052 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494111
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 494112 CCCACATTGGGC 494123
>seq7
Length=1146271
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 124901 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 124960
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 124961 CCCACATTGGGC 124972
>seq21
Length=276254
Score = 96.9 bits (106), Expect = 6e-15
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | |||||| ||||| || ||||||||||| ||
Sbjct 32077 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 32136
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098
||||| || ||||| || | || ||| ||||| || ||||||||||||||||| |
Sbjct 32137 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 32194
Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158
||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || |
Sbjct 32195 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 32254
Query 10159 TTTCGTTGGCGACCGCTTC 10177
||| | |||| |||||
Sbjct 32255 GCTCGATCTCGACGGCTTC 32273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621789425160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |