Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq25 280 3e-70
seq5 152 1e-31
seq21 111 3e-19
>seq25
Length=115453
Score = 280 bits (310), Expect = 3e-70
Identities = 555/811 (68%), Gaps = 14/811 (2%)
Strand=Plus/Minus
Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851
|||| |||||||||||||||||||||||| || ||||||| |||||| ||||||
Sbjct 3744 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 3685
Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910
| || |||||| | | || | || | || | | | ||||| ||| ||
Sbjct 3684 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCATACT 3626
Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970
| |||| ||| ||||||| ||| ||||||||| |||||||| | || |
Sbjct 3625 TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAG 3566
Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030
|||| | ||| ||| |||||| | || ||| | || ||||||||||||||| ||||
Sbjct 3565 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 3506
Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090
||||||| ||| | ||| | | | ||| ||| ||| |||||| | || |
Sbjct 3505 AGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 3446
Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150
| | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || |
Sbjct 3445 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 3386
Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210
|||||||||| |||||||| || | | || |||| | | ||| || | || |
Sbjct 3385 GCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGA 3326
Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270
|||||||| |||| |||||| ||||| |||||| | ||| | | | || ||||
Sbjct 3325 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGT 3266
Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330
||| || | || | |||||||| |||||||||||| ||||| |||||| ||||
Sbjct 3265 GGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 3206
Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390
| |||||||| || ||| |||||| ||| || ||||| || || ||||| |
Sbjct 3205 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 3146
Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450
| | || ||| | |||||| || || || |||||| |||||||| || ||| |
Sbjct 3145 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACA 3086
Query 245451 GGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508
|| |||||||| || | | ||| || |||| ||||||||||| ||| | ||| |
Sbjct 3085 TGAGGTTGTACGTCTCGATC-GCGCGCTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 3029
Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564
| | |||||| ||||||| || |||| | || ||| | | ||||| ||
Sbjct 3028 CACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 2972
Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595
| || ||||||||||||||||| || |||||
Sbjct 2971 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 2941
Score = 183 bits (202), Expect = 6e-41
Identities = 610/940 (65%), Gaps = 68/940 (7%)
Strand=Plus/Minus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| |||||| || || |||||||||| ||| | |||||||||||||| ||||||
Sbjct 4918 ACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTACATGCCCGTCTTG 4859
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| || | |||| ||| || |||||| | ||| |||| | ||| ||
Sbjct 4858 AGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT-----------GG 4810
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916
||| | || | || || |||||| ||||| |||||||| ||| | | || ||
Sbjct 4809 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCG 4751
Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976
|||| | | ||||| | ||||||| || ||||| || |||||||||||||| |||||
Sbjct 4750 GCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTG 4691
Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036
|| | || |||| || || |||||| | |||||| ||||| |||||| | | |
Sbjct 4690 AGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 4631
Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---TTC 244093
||| |||||||||||||| ||| || | ||| ||| ||| | ||
Sbjct 4630 TTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTG 4574
Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153
|| ||||| ||||| || | || || ||||| ||||| |||| || |||||||
Sbjct 4573 ACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCG 4514
Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACACC 244210
| ||| || ||| || ||||| || ||| |||||||| || | | ||
Sbjct 4513 AACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCGCAGACG 4454
Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270
||| || ||| | | ||||||| |||| | ||| ||| ||| | || |
Sbjct 4453 AGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCTT--CTCCTTCAACTCGGCC 4406
Query 244271 ATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
| || | |||||| ||| | ||| | ||||| ||| |||| | || || | |||
Sbjct 4405 CAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGGTCGTACTGTAAGAGGCCGTGGCT 4347
Query 244330 GACGGG---GCTGCC------CTCGTAGGTCGGGTAGGGACCG---TCGC---GCTGGGC 244374
|||| || ||| || ||| | |||||| ||| |||| | |||||
Sbjct 4346 CGCGGGCGAGCCGCCGTTCTCCTTGTACGACGGGTACCAGCCGGGCTCGCCAGGGTGGGC 4287
Query 244375 CA--GCTTACA-----GC--TCTCG---------TCGAGGGCGGCGTAGTAGATGGTCTC 244416
| || || || | ||| |||| ||||||| |||||| |||||
Sbjct 4286 GATCGCGTAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTCTC 4227
Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476
||||||| ||| | || ||| |||| | || ||| || | || | |||
Sbjct 4226 GAAGATCTGGACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGGCCAT 4167
Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536
|||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| |||
Sbjct 4166 GAAGGCGTCGGCGAGGCCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCG 4107
Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596
| ||| || |||||||| ||||| ||||||| | ||| |||||| ||||
Sbjct 4106 CTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAGGTTGTACGTGAC 4047
Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636
| |||||||||| |||| || ||||||||||||
Sbjct 4046 GACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 4007
>seq5
Length=1227376
Score = 152 bits (168), Expect = 1e-31
Identities = 224/311 (72%), Gaps = 7/311 (2%)
Strand=Plus/Minus
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
|||||| |||||| | |||||||| || || | ||||| ||||||||||| |||||
Sbjct 777781 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTCCTCTTCTC 777722
Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924
| |||||| || | |||||| || |||| | ||||||| ||||| |
Sbjct 777721 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATCCGCGAGGCGG 777666
Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984
| ||||||||| ||||||||||||| || |||| ||||| || |||||||||||
Sbjct 777665 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCAAGCTCATCGGCATGAACA 777606
Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTC 43044
||| ||||||||| |||||||| ||| ||| || |||| | || | | | ||
Sbjct 777605 GCGATCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCGCTCGGCA 777546
Query 43045 TC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103
| || | ||||| ||| | | ||| |||||||||||||| | |||||| |||||
Sbjct 777545 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 777487
Query 43104 GGCAAGACCAA 43114
|||||||||||
Sbjct 777486 GGCAAGACCAA 777476
Score = 152 bits (168), Expect = 1e-31
Identities = 141/175 (81%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||||| || |||||||||| |||||| | | | | ||| ||
Sbjct 778052 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 777995
Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750
| |||||||| | || || || || ||||||||||||||||||||||||| ||| | |
Sbjct 777994 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 777935
Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805
|||| |||||||||||||||||| || | | |||||||||||||||||||||
Sbjct 777934 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 777880
>seq21
Length=276254
Score = 111 bits (122), Expect = 3e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||| || |||||||| |||||| | || | |||
Sbjct 32613 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTC 32554
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|| | || | ||||| || || |||| |||||||||||||||||||| ||| | |||
Sbjct 32553 TTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 32494
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806
||||| ||||||||||||||| || || | ||||||||| | || ||||||
Sbjct 32493 GCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTCTCG 32440
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||||||||| |||||||| || || |||||| ||| |||||| |
Sbjct 32937 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGGTTCTCG 32878
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529
||||||||| | ||||| ||||| |||||||| ||||||||
Sbjct 32877 GCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 32831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338574375280
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