Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03- 01] 53 sequences; 20,270,281 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25 280 3e-70 seq5 152 1e-31 seq21 111 3e-19 >seq25 Length=115453 Score = 280 bits (310), Expect = 3e-70 Identities = 555/811 (68%), Gaps = 14/811 (2%) Strand=Plus/Minus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| |||||||||||||||||||||||| || ||||||| |||||| |||||| Sbjct 3744 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 3685 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910 | || |||||| | | || | || | || | | | ||||| ||| || Sbjct 3684 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCATACT 3626 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 | |||| ||| ||||||| ||| ||||||||| |||||||| | || | Sbjct 3625 TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAG 3566 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 |||| | ||| ||| |||||| | || ||| | || ||||||||||||||| |||| Sbjct 3565 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 3506 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 ||||||| ||| | ||| | | | ||| ||| ||| |||||| | || | Sbjct 3505 AGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 3446 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || | Sbjct 3445 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 3386 Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210 |||||||||| |||||||| || | | || |||| | | ||| || | || | Sbjct 3385 GCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGA 3326 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 |||||||| |||| |||||| ||||| |||||| | ||| | | | || |||| Sbjct 3325 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGT 3266 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || | || | |||||||| |||||||||||| ||||| |||||| |||| Sbjct 3265 GGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 3206 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| || ||| |||||| ||| || ||||| || || ||||| | Sbjct 3205 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 3146 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 | | || ||| | |||||| || || || |||||| |||||||| || ||| | Sbjct 3145 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACA 3086 Query 245451 GGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508 || |||||||| || | | ||| || |||| ||||||||||| ||| | ||| | Sbjct 3085 TGAGGTTGTACGTCTCGATC-GCGCGCTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 3029 Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | | |||||| ||||||| || |||| | || ||| | | ||||| || Sbjct 3028 CACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 2972 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | || ||||||||||||||||| || ||||| Sbjct 2971 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 2941 Score = 183 bits (202), Expect = 6e-41 Identities = 610/940 (65%), Gaps = 68/940 (7%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || || |||||||||| ||| | |||||||||||||| |||||| Sbjct 4918 ACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTACATGCCCGTCTTG 4859 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | |||| ||| || |||||| | ||| |||| | ||| || Sbjct 4858 AGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT-----------GG 4810 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||| | || | || || |||||| ||||| |||||||| ||| | | || || Sbjct 4809 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCG 4751 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 |||| | | ||||| | ||||||| || ||||| || |||||||||||||| ||||| Sbjct 4750 GCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTG 4691 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 || | || |||| || || |||||| | |||||| ||||| |||||| | | | Sbjct 4690 AGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 4631 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---TTC 244093 ||| |||||||||||||| ||| || | ||| ||| ||| | || Sbjct 4630 TTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTG 4574 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || ||||| ||||| || | || || ||||| ||||| |||| || ||||||| Sbjct 4573 ACGACCTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCG 4514 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACACC 244210 | ||| || ||| || ||||| || ||| |||||||| || | | || Sbjct 4513 AACGCCTCGTTGAAGCCGAGGATCTGGCTAGTCGACGCGGTCGGCATCGGTGCGCAGACG 4454 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 ||| || ||| | | ||||||| |||| | ||| ||| ||| | || | Sbjct 4453 AGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCTT--CTCCTTCAACTCGGCC 4406 Query 244271 ATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | || | |||||| ||| | ||| | ||||| ||| |||| | || || | ||| Sbjct 4405 CAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGGTCGTACTGTAAGAGGCCGTGGCT 4347 Query 244330 GACGGG---GCTGCC------CTCGTAGGTCGGGTAGGGACCG---TCGC---GCTGGGC 244374 |||| || ||| || ||| | |||||| ||| |||| | ||||| Sbjct 4346 CGCGGGCGAGCCGCCGTTCTCCTTGTACGACGGGTACCAGCCGGGCTCGCCAGGGTGGGC 4287 Query 244375 CA--GCTTACA-----GC--TCTCG---------TCGAGGGCGGCGTAGTAGATGGTCTC 244416 | || || || | ||| |||| ||||||| |||||| ||||| Sbjct 4286 GATCGCGTAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTCTC 4227 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||||| ||| | || ||| |||| | || ||| || | || | ||| Sbjct 4226 GAAGATCTGGACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGGCCAT 4167 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| ||| Sbjct 4166 GAAGGCGTCGGCGAGGCCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCG 4107 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | ||| || |||||||| ||||| ||||||| | ||| |||||| |||| Sbjct 4106 CTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAGGTTGTACGTGAC 4047 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 | |||||||||| |||| || |||||||||||| Sbjct 4046 GACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 4007 >seq5 Length=1227376 Score = 152 bits (168), Expect = 1e-31 Identities = 224/311 (72%), Gaps = 7/311 (2%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | ||||| ||||||||||| ||||| Sbjct 777781 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTCCTCTTCTC 777722 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | |||||| || | |||||| || |||| | ||||||| ||||| | Sbjct 777721 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATCCGCGAGGCGG 777666 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 | ||||||||| ||||||||||||| || |||| ||||| || ||||||||||| Sbjct 777665 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCAAGCTCATCGGCATGAACA 777606 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTC 43044 ||| ||||||||| |||||||| ||| ||| || |||| | || | | | || Sbjct 777605 GCGATCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCGCTCGGCA 777546 Query 43045 TC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 | || | ||||| ||| | | ||| |||||||||||||| | |||||| ||||| Sbjct 777545 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 777487 Query 43104 GGCAAGACCAA 43114 ||||||||||| Sbjct 777486 GGCAAGACCAA 777476 Score = 152 bits (168), Expect = 1e-31 Identities = 141/175 (81%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||||| || |||||||||| |||||| | | | | ||| || Sbjct 778052 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 777995 Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | |||||||| | || || || || ||||||||||||||||||||||||| ||| | | Sbjct 777994 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 777935 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 |||| |||||||||||||||||| || | | ||||||||||||||||||||| Sbjct 777934 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 777880 >seq21 Length=276254 Score = 111 bits (122), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| || |||||||| |||||| | || | ||| Sbjct 32613 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTC 32554 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | ||||| || || |||| |||||||||||||||||||| ||| | ||| Sbjct 32553 TTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 32494 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 ||||| ||||||||||||||| || || | ||||||||| | || |||||| Sbjct 32493 GCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTCTCG 32440 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || |||||| ||| |||||| | Sbjct 32937 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGGTTCTCG 32878 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||||||| | ||||| ||||| |||||||| |||||||| Sbjct 32877 GCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 32831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338574375280